Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f07
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207...    26   7.2  
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649...    25   9.5  
06_02_0011 - 10569471-10572245                                         25   9.5  

>03_02_0821 -
           11519840-11519989,11520333-11520476,11520556-11520754,
           11521309-11521412,11521488-11521598,11521653-11521771,
           11521858-11522002,11522516-11522568,11522676-11522721,
           11522818-11522963,11523691-11523760,11524930-11525083,
           11525186-11525307,11525612-11525835,11526317-11526371,
           11526793-11526972
          Length = 673

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 274 VTIYSTGFMVMNLDKTKATKI 212
           V IY+ G+  MN++KTK  K+
Sbjct: 143 VGIYNPGYWGMNIEKTKVYKV 163


>06_03_0577 +
           22461831-22462023,22462378-22463160,22463380-22464936,
           22465082-22465449
          Length = 966

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  KNKIKAEMAKPKGNLDVIEEIYRQIPAFT 155
           +N++  E+    GNL  + E+Y  + AFT
Sbjct: 380 QNRLSGEIPPTLGNLTQLSELYLSMNAFT 408


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 174 TFYVFVTF-FVLSTILVAFVLSRFITIKPVE*IVTFKLKYNDLL 302
           TF+ F  F F+ S +++  +LSR I  K V   V + +   DLL
Sbjct: 812 TFFCFNAFSFMSSIVVIMLLLSRTIREKDVHIDVLYLIMILDLL 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,016,845
Number of Sequences: 37544
Number of extensions: 93316
Number of successful extensions: 238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)