Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f07
         (311 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123603-1|BAC85658.1|  143|Homo sapiens protein ( Homo sapiens ...    33   0.18 
AK126604-1|BAC86609.1|  210|Homo sapiens protein ( Homo sapiens ...    30   1.7  
L79988-1|AAL77438.1|  403|Homo sapiens nuclear autoantigen protein.    28   6.7  
AF056322-1|AAC39790.1|  879|Homo sapiens SP100-HMG nuclear autoa...    28   6.7  
AC010149-1|AAY14879.1|  843|Homo sapiens unknown protein.              28   6.7  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    28   6.7  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    27   8.8  

>AK123603-1|BAC85658.1|  143|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41609 fis, clone CTONG3001560. ).
          Length = 143

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 IY*CILRRHILCFCYVFCVVYNFSCLCFVQVH 244
           ++ C +R  +LC C   C+V   +C CFV VH
Sbjct: 70  VFSCCVRVLVLCVCTHVCLVTVCACACFVCVH 101


>AK126604-1|BAC86609.1|  210|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44641 fis, clone BRACE2030039. ).
          Length = 210

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 179 LCFCYVFCV-VYNFSCLCFVQVHYHKTCRIDC 271
           +C  Y +CV V    C+C V  H H  C + C
Sbjct: 43  VCTVYAWCVHVCTVWCVCMVCAHVHCVCMVMC 74


>L79988-1|AAL77438.1|  403|Homo sapiens nuclear autoantigen protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 212 CRQHKKRNKNIKCVF*EYISKC 147
           C +HKK+N +    F E++ KC
Sbjct: 222 CEEHKKKNPDASVKFSEFLKKC 243


>AF056322-1|AAC39790.1|  879|Homo sapiens SP100-HMG nuclear
           autoantigen protein.
          Length = 879

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 212 CRQHKKRNKNIKCVF*EYISKC 147
           C +HKK+N +    F E++ KC
Sbjct: 698 CEEHKKKNPDASVKFSEFLKKC 719


>AC010149-1|AAY14879.1|  843|Homo sapiens unknown protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 212 CRQHKKRNKNIKCVF*EYISKC 147
           C +HKK+N +    F E++ KC
Sbjct: 662 CEEHKKKNPDASVKFSEFLKKC 683


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 161 YISKCWYLTIYFFNDI*VSFRFCHLCFYFVFVFFLSDLVCSVV 33
           Y+S C YL ++    + VS   C LC Y     +L   VC  V
Sbjct: 84  YVSVCMYLCVFLCVCVYVSVSVC-LCVYLHISVYLCVYVCICV 125


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 149 IY*CILRRHILCFCYVFCV-VYNFSCLCFVQVHYH 250
           +Y C+      C C   CV  + ++C+C V VH H
Sbjct: 57  MYMCVYTHIYACTCVCVCVHTHTYTCIC-VCVHTH 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,189,246
Number of Sequences: 237096
Number of extensions: 546971
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)