Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f05
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    36   0.004
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    31   0.16 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    29   0.86 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   4.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.0  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
 Frame = +1

Query: 385 RTHT-CGELRPKNVGERVVICGWVQYSRLSK----FLLLRDAYGLAQC--IVGCDNID-- 537
           RT+T   ++  KN G+ V++   V  SRL      F  LR  Y   Q   +V  D I   
Sbjct: 90  RTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCFFSLRQKYDTIQALAVVNKDTISKQ 149

Query: 538 ----LSSLQLESVVQIEGMVSIRPGDTVNPEMATGEIEVTIISLKVLNPQKK 681
                 S+ LES+V +EG+V   P   +       + E+ I S+ V++P KK
Sbjct: 150 MVKWCGSISLESIVLVEGIVKKSP--EIIKSATVQDAEIHISSIYVISPIKK 199


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = +1

Query: 430 RVVICGWVQYSRLSK---FLLLRDAYGLAQCIVGCD-----NIDLSSLQLESVVQIEGMV 585
           RV + GWV   R  K   F++LRD  G  QC++        + D  +L  ES V + G++
Sbjct: 143 RVRVNGWVHRMRTQKGIIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCLYGVI 202

Query: 586 SIRP 597
              P
Sbjct: 203 KELP 206


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 419 MSVKESSYAAGCSIHVCPNFYCFETPTD 502
           +S  E S+ +G SI  C NFY    PTD
Sbjct: 585 LSYSEQSFDSGVSILSCQNFYNIFHPTD 612


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 538 LSSLQLESVVQIEGMVSIRPGDTVNPEMATGEIEVTIISLKVLNPQK 678
           LSS+  ESVVQ+ G +  RP     P     E E+ +  +K+LN  K
Sbjct: 83  LSSIPPESVVQVTGKLQRRPEHDRRP---GNEFELHVEDVKLLNVAK 126


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 145 TEIVTMLGHKINSNKIKNVCTVFRSTNILKHLCNNN 252
           TE++  LG   N   ++N   VF  T    H  NN+
Sbjct: 496 TELLDQLGIPKNQRSLQNATNVFEPTEFTFHSGNNS 531


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 704 IVF*VECYFFCGFKTFKLIMVTSISPVAISGFT 606
           + F V C F   F T  ++++T I+P  I+  T
Sbjct: 387 VCFVVSCIFVSIFDTLTVLLLTWINPYVINSHT 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,166
Number of Sequences: 5004
Number of extensions: 58205
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)