Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f05
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287...    66   3e-11
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    33   0.22 
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580...    30   2.1  
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335...    29   3.6  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   4.8  
04_04_0663 + 27058470-27059033,27059355-27059972                       28   6.3  

>01_01_0367 +
           2872650-2873045,2873800-2873940,2874255-2874364,
           2875279-2875390,2875959-2876030,2876605-2876696,
           2877116-2877236,2877712-2877834,2877935-2878130,
           2878221-2878408,2878553-2878624,2879336-2879434,
           2880027-2880107,2880337-2880405,2880730-2880787,
           2881181-2881347
          Length = 698

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
 Frame = +1

Query: 385 RTHTCGELRPKNVGERVVICGWVQYSRLSK---FLLLRDAYGLAQCIVGCDNIDL----S 543
           R   CGEL   + G RV +CGWV   R      FL LRD  G  Q     +  ++    +
Sbjct: 88  RDALCGELGAGDAGRRVRLCGWVALHRAHAGLTFLTLRDRSGTVQVTTLPEYPEVYAVVN 147

Query: 544 SLQLESVVQIEGMVSIRPGDTVNPEMATGEIEVTIISLKVLN 669
            L++ESVV +EG+V  RP + +N +M TG IEV   ++ VLN
Sbjct: 148 KLRVESVVAVEGVVRSRPTEAINTDMKTGAIEVAADNIYVLN 189


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +1

Query: 388 THTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLAQCIVGCDNIDLSSLQL---- 555
           TH   E  P ++    V+ G V Y+ L       DAY  A  +   +++D+  LQL    
Sbjct: 236 THNAVEAYPSDIS---VLNGSVAYATLGMGQPTHDAYAYAGAVTSHESMDIDPLQLARYG 292

Query: 556 ESVVQIEGMVSIRPGDTVNPEMATGEIEVTIISLKVLN 669
           E ++Q    +    G   N E+   EIE+ I     L+
Sbjct: 293 EELLQRLKPLERLHGSIYNVELLKREIEIRISDCNALS 330


>07_03_1615 -
           28157237-28157472,28157649-28157728,28157853-28158009,
           28158379-28158565,28158646-28158772,28159218-28159805,
           28159898-28160443,28161579-28161620,28162081-28162145,
           28162273-28162377,28162682-28162741,28163149-28163237,
           28163611-28163732,28163862-28163968,28164041-28164111,
           28164377-28164470,28165010-28165247,28166112-28166347
          Length = 1049

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +1

Query: 406 LRPKNVG-ERVVICGWVQYSRLSKFLLLRDAYGLAQCIVGCDNIDLSSLQLESVVQI-EG 579
           LRP+    +R +  G V  S  S F ++   +  A C++ C +  +S + +E+VV++ + 
Sbjct: 57  LRPRQQDFKRRLGAGCVTCSSQSAFTIVLVIFITASCLISCSHFLMSWMSIEAVVELYQK 116

Query: 580 MVSIRPGDTVNP 615
           M+     +T+ P
Sbjct: 117 MLKSVEAETMPP 128


>02_05_0343 +
           28132348-28132878,28133256-28133366,28133477-28133590,
           28134077-28134367,28134447-28134557,28134658-28134711,
           28135587-28135666,28135749-28135864,28136491-28136605,
           28136740-28136788,28136984-28137106
          Length = 564

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
 Frame = +1

Query: 400 GELRPKNVGERVVICGWVQYSR-LSK---FLLLRDAYGLAQCI-VGCDNIDLS------- 543
           G L     G  V+I G  Q  R +SK   F++LR++    QC+ V   +  +S       
Sbjct: 90  GGLDEAAAGRSVLIRGAAQAIRPVSKKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFA 149

Query: 544 -SLQLESVVQIEGMVSIRPGDTVNPEMATGEIEVTIISLKVLN 669
            SL  ES+V +EG+VS+ P + +  +  T ++E+ +  +  +N
Sbjct: 150 TSLSKESIVDVEGVVSL-PKEPL--KATTQQVEIQVRKIYCIN 189


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 330 NIMCVSAKRYIRGYICISFNK*ANCSIVVTQVF-*NVC 220
           N+ C  AK+   GY C+S N  + C  +VT V   NVC
Sbjct: 410 NLTCQEAKQNYSGYACVSIN--STCLGMVTLVIDANVC 445


>04_04_0663 + 27058470-27059033,27059355-27059972
          Length = 393

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 136 RV*TEIVTMLGHKINSNKIKNVCTVFRSTNILKHLCNNNRTISSFIKRN 282
           RV  E   +LG K   NK  ++    ++ N  K    N+RTI+S I++N
Sbjct: 344 RVQAEEAALLGKKQTKNKQVSLGEEQKAENTAKPWKKNSRTITSKIRKN 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,530
Number of Sequences: 37544
Number of extensions: 329089
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)