Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f05
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   8.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 642 HHNKLKSFKSAEKVAFNLKN 701
           HH  L+     + V FN+KN
Sbjct: 238 HHEALQEAVPGDNVGFNVKN 257


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 642 HHNKLKSFKSAEKVAFNLKN 701
           HH  L+     + V FN+KN
Sbjct: 295 HHEALQEAVPGDNVGFNVKN 314


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 412 PKNVGERVVICGWVQYSRLSKFLLLRD 492
           P + GE+V +C  +  S    FLLL +
Sbjct: 274 PSDSGEKVSLCSSILLSLTVFFLLLAE 300


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 642 HHNKLKSFKSAEKVAFNLKN 701
           HH  L      + V FN+KN
Sbjct: 295 HHEALTEALPGDNVGFNVKN 314


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 642 HHNKLKSFKSAEKVAFNLKN 701
           HH  L      + V FN+KN
Sbjct: 6   HHEALTEALPGDNVGFNVKN 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,718
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)