Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22e21
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    29   3.2  
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017           29   3.2  
06_03_1259 - 28800954-28802468                                         29   4.2  
05_07_0240 + 28606345-28607316                                         28   5.5  
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480...    28   5.5  
09_03_0139 + 12692844-12694982                                         28   7.3  
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    28   7.3  

>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 420 PLAEHTIRAPSNLNTAHSVGVVSD 349
           P+ +H   APS +  AH +G++SD
Sbjct: 229 PVTDHNFDAPSKIPFAHGMGLISD 252


>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
          Length = 824

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 227 FVRAMSEGLEYETIVQNGPRKVTMTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIV 406
           F+R + EG+E    V  G  KV  T GLD+  +      +  DT    W    +E   + 
Sbjct: 33  FLRKLVEGIEDTVGVGKGTSKVYATIGLDKARV-GRTRTLADDTAAPRW----YESFHVY 87

Query: 407 CS 412
           C+
Sbjct: 88  CA 89


>06_03_1259 - 28800954-28802468
          Length = 504

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 571 GSVDHRHVRSYPRHEHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGRAHY 401
           G    R    +PR +H+ L   H + H+  E ++     RE R      A PG  H+
Sbjct: 151 GGEPRRLELQFPR-QHRELIHGHYIQHVIDEATKMRLRSRERRLYTNRAAAPGDDHH 206


>05_07_0240 + 28606345-28607316
          Length = 323

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 472 ECAFIIRELRAELREVATPGRAHYPGAFKLEHRP 371
           E A  I+ LRA    +AT   AH P AF+  HRP
Sbjct: 73  EVAAAIQHLRAADPALATVIDAHDPPAFQCPHRP 106


>03_05_0502 +
           24947444-24947665,24947768-24947823,24947929-24948099,
           24948508-24948631,24949086-24949142,24949216-24949312,
           24949619-24949826,24950637-24950697,24950793-24950846
          Length = 349

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 567 RLITDTFGPTHVMNINFLRLDISSPI-CNLRYPNARSSSENCVRNSVKSLPLAEH 406
           RL++      HV+N N   LD+++P+  NL  PN  +   + V+     L L +H
Sbjct: 237 RLVSFKGKTIHVLNKNEHALDMAAPVHDNLGDPNGYTDDYSLVKKRTNVLLLGDH 291


>09_03_0139 + 12692844-12694982
          Length = 712

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 363 RPSGRCSSLKAPG*CARPGVATSRSSARSSLMMNAHS 473
           +PSG  + L  PG  AR   A + SSA SS     HS
Sbjct: 596 QPSGAAAVLSQPGLVARLAEALAASSASSSRSARDHS 632


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 595 DSFVGGHLGSVDHRHVRSYPRHEHKFLAFRH 503
           + +V  H G++    +RS+ RH  K LAF H
Sbjct: 491 NKYVNQHCGAMTESVIRSFTRHILKGLAFLH 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,493,699
Number of Sequences: 37544
Number of extensions: 393830
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)