Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22e21
(644 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L54057-1|AAA88022.1| 142|Homo sapiens CLP protein. 114 2e-25
BT006968-1|AAP35614.1| 142|Homo sapiens coactosin-like 1 (Dicty... 114 2e-25
BC053682-1|AAH53682.1| 142|Homo sapiens coactosin-like 1 (Dicty... 114 2e-25
BC042970-1|AAH42970.1| 142|Homo sapiens coactosin-like 1 (Dicty... 114 2e-25
BC016702-1|AAH16702.1| 142|Homo sapiens coactosin-like 1 (Dicty... 114 2e-25
BC010884-1|AAH10884.1| 142|Homo sapiens coactosin-like 1 (Dicty... 114 2e-25
BC010039-1|AAH10039.1| 142|Homo sapiens coactosin-like 1 (Dicty... 114 2e-25
AF250287-1|AAF81273.1| 430|Homo sapiens cervical SH3P7 protein. 38 0.023
AF151364-1|AAG13120.1| 430|Homo sapiens mucin-associated protei... 38 0.023
AF218020-1|AAG17262.2| 430|Homo sapiens unknown protein. 38 0.040
CR457167-1|CAG33448.1| 430|Homo sapiens HIP-55 protein. 37 0.053
BC031687-1|AAH31687.1| 430|Homo sapiens drebrin-like protein. 37 0.053
BC011677-1|AAH11677.1| 431|Homo sapiens drebrin-like protein. 37 0.053
AK027367-1|BAB55065.1| 439|Homo sapiens protein ( Homo sapiens ... 37 0.053
AF197060-1|AAF13701.1| 430|Homo sapiens src homology 3 domain-c... 37 0.053
AF077353-1|AAF80228.1| 430|Homo sapiens drebrin F protein. 37 0.053
U00802-1|AAA16256.1| 649|Homo sapiens drebrin E2 protein. 36 0.12
D17530-1|BAA04480.1| 649|Homo sapiens drebrin E protein. 36 0.12
BC007567-1|AAH07567.1| 649|Homo sapiens drebrin 1 protein. 36 0.12
BC007281-1|AAH07281.1| 649|Homo sapiens drebrin 1 protein. 36 0.12
BC000283-1|AAH00283.1| 649|Homo sapiens drebrin 1 protein. 36 0.12
Y19212-1|CAB76832.1| 551|Homo sapiens cytokeratin protein. 31 4.6
Y17282-1|CAA76730.1| 551|Homo sapiens cytokeratin type II protein. 31 4.6
BC060884-1|AAH60884.1| 1045|Homo sapiens topoisomerase I binding... 31 4.6
AL353671-3|CAH71254.1| 1045|Homo sapiens topoisomerase I binding... 31 4.6
AF098300-1|AAD23379.1| 1045|Homo sapiens topoisomerase I-binding... 31 4.6
AB045732-1|BAB03714.1| 1045|Homo sapiens RING-finger protein pro... 31 4.6
>L54057-1|AAA88022.1| 142|Homo sapiens CLP protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>BT006968-1|AAP35614.1| 142|Homo sapiens coactosin-like 1
(Dictyostelium) protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>BC053682-1|AAH53682.1| 142|Homo sapiens coactosin-like 1
(Dictyostelium) protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>BC042970-1|AAH42970.1| 142|Homo sapiens coactosin-like 1
(Dictyostelium) protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVHGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>BC016702-1|AAH16702.1| 142|Homo sapiens coactosin-like 1
(Dictyostelium) protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>BC010884-1|AAH10884.1| 142|Homo sapiens coactosin-like 1
(Dictyostelium) protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>BC010039-1|AAH10039.1| 142|Homo sapiens coactosin-like 1
(Dictyostelium) protein.
Length = 142
Score = 114 bits (275), Expect = 2e-25
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +2
Query: 296 MTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG 475
M T +D+E RAAY VR D + W FK++G+ IV +G+++ F Q +DD R F
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 476 YLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLEN 643
++R GD MSKR KF +TW+G NVS + RAK TDK ++K+++ NFA E + +
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISD 116
>AF250287-1|AAF81273.1| 430|Homo sapiens cervical SH3P7 protein.
Length = 430
Score = 38.3 bits (85), Expect = 0.023
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMST 583
+ + + R++ D S KF+ + W G V+ + + S+
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRKGACSS 99
>AF151364-1|AAG13120.1| 430|Homo sapiens mucin-associated protein
protein.
Length = 430
Score = 38.3 bits (85), Expect = 0.023
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMST 583
+ + + R++ D S KF+ + W G V+ + + S+
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRKGACSS 99
>AF218020-1|AAG17262.2| 430|Homo sapiens unknown protein.
Length = 430
Score = 37.5 bits (83), Expect = 0.040
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R+ ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRKGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>CR457167-1|CAG33448.1| 430|Homo sapiens HIP-55 protein.
Length = 430
Score = 37.1 bits (82), Expect = 0.053
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>BC031687-1|AAH31687.1| 430|Homo sapiens drebrin-like protein.
Length = 430
Score = 37.1 bits (82), Expect = 0.053
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>BC011677-1|AAH11677.1| 431|Homo sapiens drebrin-like protein.
Length = 431
Score = 37.1 bits (82), Expect = 0.053
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>AK027367-1|BAB55065.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ14461 fis, clone MAMMA1000173, highly similar to
Homo sapiens src homology 3 domain-containing protein
HIP-55 ).
Length = 439
Score = 37.1 bits (82), Expect = 0.053
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>AF197060-1|AAF13701.1| 430|Homo sapiens src homology 3
domain-containing protein HIP-55 protein.
Length = 430
Score = 37.1 bits (82), Expect = 0.053
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>AF077353-1|AAF80228.1| 430|Homo sapiens drebrin F protein.
Length = 430
Score = 37.1 bits (82), Expect = 0.053
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 296 MTTGLDRE--TIRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSD 457
M L R ++ AY V ++ +PT+WA+F +EG R+ + G E + +
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGG-LEEMVEELNS 59
Query: 458 DERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINR 568
+ + + R++ D S KF+ + W G V+ + +
Sbjct: 60 GKVMYAFCRVK--DPNSGLPKFVLINWTGEGVNDVRK 94
>U00802-1|AAA16256.1| 649|Homo sapiens drebrin E2 protein.
Length = 649
Score = 35.9 bits (79), Expect = 0.12
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 314 RETIRAAYEDVRSDTTPTEWAVFKFEGA----RIVCSARGSDFTEFRTQFSDDERAFGYL 481
R + AAYE+V + + +WA++ +E ++ S G E F + + +G+
Sbjct: 10 RLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGG-LQELSGHFENQKVMYGFC 68
Query: 482 RLQMGDEMSKRKKFMFMTWVGPNV 553
++ D + K++ + WVG +V
Sbjct: 69 SVK--DSQAALPKYVLINWVGEDV 90
>D17530-1|BAA04480.1| 649|Homo sapiens drebrin E protein.
Length = 649
Score = 35.9 bits (79), Expect = 0.12
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 314 RETIRAAYEDVRSDTTPTEWAVFKFEGA----RIVCSARGSDFTEFRTQFSDDERAFGYL 481
R + AAYE+V + + +WA++ +E ++ S G E F + + +G+
Sbjct: 10 RLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGG-LQELSGHFENQKVMYGFC 68
Query: 482 RLQMGDEMSKRKKFMFMTWVGPNV 553
++ D + K++ + WVG +V
Sbjct: 69 SVK--DSQAALPKYVLINWVGEDV 90
>BC007567-1|AAH07567.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 35.9 bits (79), Expect = 0.12
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 314 RETIRAAYEDVRSDTTPTEWAVFKFEGA----RIVCSARGSDFTEFRTQFSDDERAFGYL 481
R + AAYE+V + + +WA++ +E ++ S G E F + + +G+
Sbjct: 10 RLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGG-LQELSGHFENQKVMYGFC 68
Query: 482 RLQMGDEMSKRKKFMFMTWVGPNV 553
++ D + K++ + WVG +V
Sbjct: 69 SVK--DSQAALPKYVLINWVGEDV 90
>BC007281-1|AAH07281.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 35.9 bits (79), Expect = 0.12
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 314 RETIRAAYEDVRSDTTPTEWAVFKFEGA----RIVCSARGSDFTEFRTQFSDDERAFGYL 481
R + AAYE+V + + +WA++ +E ++ S G E F + + +G+
Sbjct: 10 RLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGG-LQELSGHFENQKVMYGFC 68
Query: 482 RLQMGDEMSKRKKFMFMTWVGPNV 553
++ D + K++ + WVG +V
Sbjct: 69 SVK--DSQAALPKYVLINWVGEDV 90
>BC000283-1|AAH00283.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 35.9 bits (79), Expect = 0.12
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 314 RETIRAAYEDVRSDTTPTEWAVFKFEGA----RIVCSARGSDFTEFRTQFSDDERAFGYL 481
R + AAYE+V + + +WA++ +E ++ S G E F + + +G+
Sbjct: 10 RLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGG-LQELSGHFENQKVMYGFC 68
Query: 482 RLQMGDEMSKRKKFMFMTWVGPNV 553
++ D + K++ + WVG +V
Sbjct: 69 SVK--DSQAALPKYVLINWVGEDV 90
>Y19212-1|CAB76832.1| 551|Homo sapiens cytokeratin protein.
Length = 551
Score = 30.7 bits (66), Expect = 4.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 323 IRAAYEDV--RSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMG 496
++A YED+ RS W K+E ++ G D + + S+ R LR ++
Sbjct: 323 VKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEISEMNRMIQRLRAEI- 381
Query: 497 DEMSKR 514
D + K+
Sbjct: 382 DSVKKQ 387
>Y17282-1|CAA76730.1| 551|Homo sapiens cytokeratin type II protein.
Length = 551
Score = 30.7 bits (66), Expect = 4.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 323 IRAAYEDV--RSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMG 496
++A YED+ RS W K+E ++ G D + + S+ R LR ++
Sbjct: 323 VKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEISEMNRMIQRLRAEI- 381
Query: 497 DEMSKR 514
D + K+
Sbjct: 382 DSVKKQ 387
>BC060884-1|AAH60884.1| 1045|Homo sapiens topoisomerase I binding,
arginine/serine-rich protein.
Length = 1045
Score = 30.7 bits (66), Expect = 4.6
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 267 LCRMDLEK*P*RPAWTGKRLGRLTKM*GPTLHRPSG-RCSSLKAPG*CARPGVATSR--S 437
L R + E P PA G+R R ++ G HRPS C L A ARP A+S +
Sbjct: 11 LSREEGEAPPPAPASEGRRRSRRVRLRGSCRHRPSFLGCRELAASA-PARPAPASSEIMA 69
Query: 438 SARSSLMMNAHSDTSG 485
SA M+ S +G
Sbjct: 70 SAAKEFKMDNFSPKAG 85
>AL353671-3|CAH71254.1| 1045|Homo sapiens topoisomerase I binding,
arginine/serine-rich protein.
Length = 1045
Score = 30.7 bits (66), Expect = 4.6
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 267 LCRMDLEK*P*RPAWTGKRLGRLTKM*GPTLHRPSG-RCSSLKAPG*CARPGVATSR--S 437
L R + E P PA G+R R ++ G HRPS C L A ARP A+S +
Sbjct: 11 LSREEGEAPPPAPASEGRRRSRRVRLRGSCRHRPSFLGCRELAASA-PARPAPASSEIMA 69
Query: 438 SARSSLMMNAHSDTSG 485
SA M+ S +G
Sbjct: 70 SAAKEFKMDNFSPKAG 85
>AF098300-1|AAD23379.1| 1045|Homo sapiens topoisomerase I-binding RS
protein protein.
Length = 1045
Score = 30.7 bits (66), Expect = 4.6
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 267 LCRMDLEK*P*RPAWTGKRLGRLTKM*GPTLHRPSG-RCSSLKAPG*CARPGVATSR--S 437
L R + E P PA G+R R ++ G HRPS C L A ARP A+S +
Sbjct: 11 LSREEGEAPPPAPASEGRRRSRRVRLRGSCRHRPSFLGCRELAASA-PARPAPASSEIMA 69
Query: 438 SARSSLMMNAHSDTSG 485
SA M+ S +G
Sbjct: 70 SAAKEFKMDNFSPKAG 85
>AB045732-1|BAB03714.1| 1045|Homo sapiens RING-finger protein
protein.
Length = 1045
Score = 30.7 bits (66), Expect = 4.6
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 267 LCRMDLEK*P*RPAWTGKRLGRLTKM*GPTLHRPSG-RCSSLKAPG*CARPGVATSR--S 437
L R + E P PA G+R R ++ G HRPS C L A ARP A+S +
Sbjct: 11 LSREEGEAPPPAPASEGRRRSRRVRLRGSCRHRPSFLGCRELAASA-PARPAPASSEIMA 69
Query: 438 SARSSLMMNAHSDTSG 485
SA M+ S +G
Sbjct: 70 SAAKEFKMDNFSPKAG 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,090,523
Number of Sequences: 237096
Number of extensions: 2049022
Number of successful extensions: 8401
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8399
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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