Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22e17
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   0.67 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   1.5  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   6.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.3  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 72  CYRLRLIAS-YIINAYRCIRDVVVSDTPNNMEGYFYRLEP---DTQDRNEMITTPHL 230
           CY   L+ S YII+A+R I   + +D+P   +   Y L+    + Q  NE ++T  L
Sbjct: 222 CYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNEPVSTTEL 278


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 325 STGWVWLKTTRNRCDMWAWRASSPEHYSSARRCVAGCNLLLGSRKTNGL 471
           S  W+ +   RN  D+  WR ++        R    CN LLGS K+  L
Sbjct: 53  SLRWIAIIQLRNSIDI-IWRKNTKMSLLPEERDFIRCNALLGSIKSENL 100


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 472 EARSFCGCLAGDCSQQHIAAQMSSAPATMHATPTYRTGSA*SSARPS 332
           E +SF    +   S   IA  +SSAP      PTY   ++  S R S
Sbjct: 540 ETKSFSTKASTPLSTDDIATPLSSAPNPPSVMPTYARKTSSHSERSS 586


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 303 TPCHTCMAFVIVCLRLMTCLVDRRVDAASLS---FHFYLVCQVRAYRNSPPY 157
           T  H    F+++ ++ +   +++ V+  S++     FY VC   +Y +  PY
Sbjct: 583 TTRHKFFRFLLLTVQSLVFAIEKLVNFFSMANFFLAFYFVCNATSYSSLNPY 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,317
Number of Sequences: 5004
Number of extensions: 53106
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)