Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22e04
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   2.6  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    24   4.6  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    23   8.1  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    23   8.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    23   8.1  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 13  MPPRLQKQMKQMEEHLKKYPEHYPLNQH 96
           +PP   +Q  Q  E  KK PE   LN H
Sbjct: 138 IPPLTDEQWNQEFELYKKSPEFEKLNSH 165


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 64  KYPEHYPLNQHESD*ITTADIH 129
           K+ +H+PLN+  +D  + A IH
Sbjct: 59  KFNKHHPLNEESNDLPSDAAIH 80


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +3

Query: 144 FYGLLSFRCFYS---IYCLNILQFQLEI 218
           FY L  F CFY    I C  +LQ  L +
Sbjct: 558 FYVLFLFACFYGLDYILCAELLQAFLRV 585


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 149 WFTVFSVFLFYL 184
           W TVF VFLF++
Sbjct: 198 WVTVFIVFLFFI 209


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  EMPPRLQKQMKQMEEHLKKYPEHYPLNQH 96
           E  P LQKQ+  ++  ++ YP    L +H
Sbjct: 145 ETRPDLQKQLTDLKNPIEWYPGARKLRRH 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,417
Number of Sequences: 5004
Number of extensions: 15741
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)