Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22e04
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.21 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   2.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   3.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   6.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   8.0  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 57  SKEVSRALPAQSTRERLNNYCRYSHC*NYFYGLLSFRCFYSIYCLNILQFQLEI 218
           SKE  + + + S   + +NY  Y++  N  Y   + + +Y  Y +NI Q  + +
Sbjct: 309 SKE-PKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPV 361


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 149 WFTVFSVFLFYLLFEYSSVST 211
           WF   ++FLF  + E++ V+T
Sbjct: 297 WFLGCTIFLFAAMVEFAFVNT 317


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +3

Query: 54  TSKEVSR-ALPAQSTRERL------NNYCRYSHC*NYFYGLLSFRCFYSIYCLNILQFQL 212
           TSKE SR     + ++ER       NNY   ++   Y Y   + + +Y  Y +NI Q  +
Sbjct: 295 TSKERSRDRTERERSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPV 354

Query: 213 EI 218
            +
Sbjct: 355 PV 356


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 149 WFTVFSVFLFYLLFEYSSVS 208
           W +  SVF+F  L E++ V+
Sbjct: 279 WMSSCSVFVFLSLMEFAVVN 298


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 25  LQKQMKQMEEHLKKYPEHYPLNQH 96
           L+ + ++  EH +K  E+Y  + H
Sbjct: 772 LEAEKREKSEHCEKGKEYYAASFH 795


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 222 GLSRVETEEYSNSK*NKN 169
           GL  V+TE++SN +  +N
Sbjct: 277 GLYYVDTEQFSNPQYEEN 294


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 294 ITIYSKNQNRSL*VVIIYFL 235
           + +YS  QNRS  +   YF+
Sbjct: 217 LIVYSWEQNRSWRITHSYFM 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,331
Number of Sequences: 438
Number of extensions: 1407
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)