Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22d16
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 23 5.5
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 23 5.5
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.2
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 23 7.2
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 23 7.2
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 23 7.2
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 23 9.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.6
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 23 9.6
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 23 9.6
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 23 9.6
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 23 9.6
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 23.4 bits (48), Expect = 5.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 144 LSRTQLDLCASGKKAYVERGPSGKAGLI 61
L+++ LD C +E+GP G ++
Sbjct: 258 LAKSYLDKCGITSLCMIEKGPDGNGTVV 285
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 23.4 bits (48), Expect = 5.5
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 67 PGFAG--WPPFHIGLFATCTEV*LGSGEAISITKVLGGNNIVTFPTVH 204
P AG W FHIG+F + G + + K IV T+H
Sbjct: 74 PSSAGPQWREFHIGMFEIGKPLGKGKFGRVYLAKEKKTGFIVALKTLH 121
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 119 VQVAKRPMWKGGHPAKPGLFLPMYIKLIL 33
V +A +WK + PG+ MYI + L
Sbjct: 293 VLIAFSEVWKSSYDFSPGISGLMYISITL 321
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 119 VQVAKRPMWKGGHPAKPGLFLPMYIKLIL 33
V +A +WK + PG+ MYI + L
Sbjct: 293 VLIAFSEVWKSSYDFSPGISGLMYISITL 321
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 119 VQVAKRPMWKGGHPAKPGLFLPMYIKLIL 33
V +A +WK + PG+ MYI + L
Sbjct: 293 VLIAFSEVWKSSYDFSPGISGLMYISITL 321
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 23.0 bits (47), Expect = 7.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1
Query: 240 YLLAYYKNRYHIMYSWKSY 184
Y L+Y +NRY + W +
Sbjct: 274 YFLSYVENRYQSLDCWNKF 292
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.0 bits (47), Expect = 7.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -3
Query: 124 PLCKWQKGLCGKGAIRQSRAYSYLCILN 41
P W + G + + ++++CILN
Sbjct: 410 PPFPWMSPIVGNSMVTVANGHNWMCILN 437
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 22.6 bits (46), Expect = 9.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 253 RHLILFISILQKQIPYYVQLEKLQ 182
R L+ FISI +K+IP L LQ
Sbjct: 89 RFLLAFISIGEKRIPCSENLALLQ 112
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 185 TMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKGGHPAKPGLF 60
T+ + PS+ I + P + +V R PA+PG +
Sbjct: 327 TIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNNQPAQPGQY 368
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -2
Query: 95 WKGGHPAKPGLFLPMYIKLILIRL*YSVFIN 3
W GGH +FL + L ++ +S +N
Sbjct: 152 WSGGHDLSGHVFLLTHSSLFMLSENFSFILN 182
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 22.6 bits (46), Expect = 9.6
Identities = 5/19 (26%), Positives = 14/19 (73%)
Frame = -3
Query: 259 LDRHLILFISILQKQIPYY 203
+D++++LF+ + +PY+
Sbjct: 249 VDQYMVLFLKFVSTMLPYF 267
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 22.6 bits (46), Expect = 9.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -1
Query: 243 FYLLAYYKNRYHIMYSWKSYN 181
+YL Y ++ Y Y+W Y+
Sbjct: 381 YYLAGYLQSMYFTTYTWILYD 401
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 46 IYIGRNKPGFAGWPPF 93
IYIG PGF +P F
Sbjct: 432 IYIGAVWPGFTAFPDF 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,705
Number of Sequences: 5004
Number of extensions: 22429
Number of successful extensions: 45
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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