Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22d16
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832... 29 0.51
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156... 27 1.6
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073... 27 2.1
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 26 3.6
12_01_1066 - 10998305-10998473,10998759-10998910,10999051-109992... 26 4.8
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 25 6.3
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 25 6.3
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 25 6.3
10_01_0121 - 1493822-1494316 25 8.3
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 25 8.3
>05_03_0089 -
8327044-8327142,8327238-8327306,8327413-8327504,
8327932-8329042
Length = 456
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 197 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 87
+G V+ F V+EI + P+ T + +KRPMW+G
Sbjct: 242 LGAVSFAFAGHNVVLEIQATIPS-TPERPSKRPMWRG 277
>08_01_0185 +
1558580-1558755,1558848-1559737,1559828-1559919,
1560018-1560086,1560218-1560316
Length = 441
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 197 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 87
+G V + V+EI + P+ T + +K+PMWKG
Sbjct: 227 LGDVAFAYAGHNVVLEIQATIPS-TPEKPSKKPMWKG 262
>08_02_0379 -
16506775-16506950,16507037-16507096,16507187-16507375,
16508131-16508224,16508276-16508300,16508690-16508796,
16508903-16509021,16510520-16510658
Length = 302
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 114 LHRGLIGFWRGYFNHKSTRRK*HCNFSNCT*YGIC 218
LH G++G W + K R K NF+N T IC
Sbjct: 110 LHHGILGIWYSHILSKLYRNK---NFNNVTGDVIC 141
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 28 RINISLIYIGRNKPGFAGW 84
R NI + +G PGF GW
Sbjct: 475 RDNIQFVMLGSGDPGFEGW 493
>12_01_1066 -
10998305-10998473,10998759-10998910,10999051-10999209,
10999334-10999595,10999913-10999975,11000701-11000876
Length = 326
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 160 KVLGGNNIVTFPTVHNM-VSVFVIC 231
+ +GG++ TFPT HNM + +C
Sbjct: 130 RAIGGSDDSTFPTHHNMLIGTLFLC 154
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 218 TDTILCTVGKVTMLFPPSTFVIEI 147
TD I C +G +M STF+I++
Sbjct: 442 TDRIFCAMGSKSMTSEQSTFMIDL 465
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 144 LSRTQLDLCASGKKAYVERGPSGKAGLIPTYVY*TY 37
+ +T +L ASG+ YV+ P+ K L ++Y T+
Sbjct: 599 IEKTGAELQASGEAVYVDDIPAPKDCLYGAFIYSTH 634
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 183 NVISS*YFCD*NSLSRTQLDLCASGKKAYVE 91
N+I S Y+ D ++L L+L +G YVE
Sbjct: 304 NIIGSVYYSDGDTLKDLALELVENGLAKYVE 334
>10_01_0121 - 1493822-1494316
Length = 164
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 120 CASGKKAYVERGPSGKAGLIPT 55
C+ G++ ++RG SG + +PT
Sbjct: 56 CSGGRQGGMQRGRSGASSFLPT 77
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 243 FYLLAYYKNRYHIMYSWKSYNV 178
++ A +K Y I SWK YNV
Sbjct: 7 WFRYAAHKFEYSISLSWKKYNV 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,436,997
Number of Sequences: 37544
Number of extensions: 150365
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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