Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22d16
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   2.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   2.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   2.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   4.6  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    19   8.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      19   8.0  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 118 TEV*LGSGEAISITKVLGGNNIVTFPTVHNMV 213
           TEV +G G   S  +  G     T  TV+  +
Sbjct: 280 TEVTIGGGGTTSSRRTTGSRAAATTTTVYQFI 311


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 118 TEV*LGSGEAISITKVLGGNNIVTFPTVHNMV 213
           TEV +G G   S  +  G     T  TV+  +
Sbjct: 280 TEVTIGGGGTTSSRRTTGSRAAATTTTVYQFI 311


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 118 TEV*LGSGEAISITKVLGGNNIVTFPTVHNMV 213
           TEV +G G   S  +  G     T  TV+  +
Sbjct: 280 TEVTIGGGGTTSSRRTTGSRAAATTTTVYQFI 311


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 163 VLGGNNIVTFPTVHNMV 213
           VLG N I+TF T+ + V
Sbjct: 265 VLGTNTILTFMTLASKV 281


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 166 LGGNNIVTFP 195
           L GN +VTFP
Sbjct: 897 LSGNRLVTFP 906


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 139 QNPIRPLCKWQKG 101
           Q P  P  KW +G
Sbjct: 40  QGPFNPKIKWPQG 52


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 78  RMAPFPHRPFCHLHRGLIGFWRGYFNHKSTR 170
           +MAP+  R F H+   L+   R  +  ++ R
Sbjct: 340 KMAPWVKRVFIHILPRLLVMRRPQYKFETNR 370


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 78  RMAPFPHRPFCHLHRGLIGFWRGYFNHKSTR 170
           +MAP+  R F H+   L+   R  +  ++ R
Sbjct: 340 KMAPWVKRVFIHILPRLLVMRRPQYKFETNR 370


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 227 ITKTDTILCTVGKVTMLFPPSTFVIE 150
           + + DT +  + +   +FP  T +IE
Sbjct: 523 VWERDTRVLPINRKQKVFPNGTLIIE 548


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 176 FPPSTFVIEIASP 138
           F PST +++++SP
Sbjct: 49  FSPSTHLMDLSSP 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,120
Number of Sequences: 438
Number of extensions: 1722
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)