Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22d11
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.82 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   1.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   4.4  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   4.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   5.8  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.6  

>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 377 ILYSLEVSWIDDRYMGWNEI 318
           +LY++E SWI  +Y+G N I
Sbjct: 105 VLYNVEQSWIGYKYLGGNRI 124


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 90  LLFTILGISNVEASTGY--DFGDFLATVLGIGIAVVGILACLGNY 218
           L F ++  S     TG+  +FG  LA  L +G    G+  CL  Y
Sbjct: 127 LAFIVISYSLTTIFTGFCHNFGGLLAARLVLGFCEAGLFPCLALY 171


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 66  KMYFQLCFLLFTILGISNVEASTGYDFGDFL 158
           ++  +L FL FT+   SN E     D+ DF+
Sbjct: 6   QILLRLLFLAFTLKSTSNAEKHDKVDYKDFV 36


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 371 YSLEVSWIDDRYMGWNEIFFSIFIYSRLAC--AETRWQVLMNLYKLVSRP 228
           Y  ++ W+D    G     F++ I+ RLA   ++ R++ ++ +Y  ++ P
Sbjct: 290 YLNQMEWLDGTVKGEENSQFTLKIHERLASFFSQKRYRNVVTIYGALNEP 339


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 32  SGFTKFVLNYFQNVFPIVFPVIHNSWYKQCGSIYRL 139
           S F K + +   +   +   + HNS +  C +IYRL
Sbjct: 840 SFFYKILRSSLASFAQVFIDITHNSKFNSCCNIYRL 875


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  ITFKMYFQLCFLLFTI--LGISNVEASTGYDFGDFLATVLGIGIAVVGILAC 206
           + F +Y  + +++  I   G   V A   +D G+   + +GIGI +V   AC
Sbjct: 333 VCFTLYLTVVYIIGYIDFEGYPIVFAKYSFDQGEIGLSFIGIGIGIVLAGAC 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,948
Number of Sequences: 5004
Number of extensions: 42151
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)