Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22d10
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 28 1.0
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 27 2.3
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.1
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 26 4.1
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 4.1
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 25 7.2
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 7.2
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 9.5
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 9.5
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 9.5
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 645 LIHSIRLALIFIVRNDSSSLLFITIHFNPSRLKNNCVQ*CLK 520
LIHS+R L F ND S + + F S L C+ CLK
Sbjct: 200 LIHSLRQLLAFSEINDFPSEIRSYLEFILSNLDLECLTLCLK 241
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 305 RLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTLSADAKIVVES*LKR 448
RL E + F FF++ LL L F ++NTL + VV + +K+
Sbjct: 9 RLKWEEYMALFLGFFFVIFEKLLSCLAFMIHNTLGLFYRSVVRNEIKK 56
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 141 LISSLLINFHEASLQFTIYIVTNFPSIFVIDGQK 40
L SSL +++ +L T+Y+ + P +FVID K
Sbjct: 492 LDSSLWLDWIVENLDHTVYVDSITPPVFVIDHSK 525
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 278 GQINRIDRVRLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTL 406
G +N +D+ L CS C + +L F++ V L + H+++ L
Sbjct: 196 GNLN-LDKA-LICSTCSISAALLLFLLYVRLPFWTLKHMFSGL 236
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 278 GQINRIDRVRLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTL 406
G +N +D+ L CS C + +L F++ V L + H+++ L
Sbjct: 174 GNLN-LDKA-LICSTCSISAALLLFLLYVRLPFWTLKHMFSGL 214
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 295 RQSSSLLFRVYCVLLYFILHSMRW 366
R S+L + C Y +LHS RW
Sbjct: 227 RMQLSILVGIICNFAYGLLHSYRW 250
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 404 TCYTNERRGTVTDQRIL*RIKYKSTQ 327
+C GT+TDQR L IK+KS +
Sbjct: 202 SCLLPNSSGTLTDQRGLDTIKHKSIE 227
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -2
Query: 564 NPSRLKNNCVQ*CLKHGCKL-RFDMINFKIVKPITTHTHTRFSQLSTTILASADNVLYK* 388
N SRL+N V L+H L R MI+ ++++ +T H H+ Q + + S +V+
Sbjct: 450 NKSRLENFSVI-LLQHILHLTRQPMISMELLEHLTEHLHSLAQQFPSALGISFISVVEGM 508
Query: 387 KKR 379
+KR
Sbjct: 509 RKR 511
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 308 LFCSECIVCFCILF--FIVCVGL--LLYLFFHLYNTLSADAKIVV 430
L CS C + + F +VC+ + L ++ F L+ L + +V+
Sbjct: 238 LICSTCSISAALFFILLLVCIPIWTLKHMLFGLFQVLGVQSCVVI 282
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 308 LFCSECIVCFCILF--FIVCVGL--LLYLFFHLYNTLSADAKIVV 430
L CS C + + F +VC+ + L ++ F L+ L + +V+
Sbjct: 228 LICSTCSISAALFFILLLVCIPIWTLKHMLFGLFQVLGVQSCVVI 272
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 430 DYNFGVSRQRVIQMKEEVQ 374
+Y+F VSRQ +IQ+ +V+
Sbjct: 578 EYSFSVSRQSIIQILSDVE 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,746
Number of Sequences: 5004
Number of extensions: 52840
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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