Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22d10
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.12 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.12 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.36 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   7.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.8  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 449 VCVCVVIG--FTILKFIISNLNLQPCFRHH*TQLFLSLDG 562
           V  CV+ G  F +  F+ +   LQP + HH   ++ SL G
Sbjct: 13  VSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCG 52


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 449 VCVCVVIG--FTILKFIISNLNLQPCFRHH*TQLFLSLDG 562
           V  CV+ G  F +  F+ +   LQP + HH   ++ SL G
Sbjct: 13  VSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCG 52


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 645 LIHSIRLALIFIVRNDSSSLLFITIHFNPSRLKNNC 538
           ++HS ++  + IV + ++S  F+  + N  RL+N C
Sbjct: 348 VLHSFQMKNVTIVDHHTASESFMKHYENEMRLRNGC 383


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 275 PGQINRIDRVRLFCSECIVCFCILFFIV 358
           P  I++  R+ +F   C VCF ++++I+
Sbjct: 401 PSDIDKYSRI-VF-PVCFVCFNLMYWII 426


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 275 PGQINRIDRVRLFCSECIVCFCILFFIV 358
           P  I++  R+ +F   C VCF ++++I+
Sbjct: 401 PSDIDKYSRI-VF-PVCFVCFNLMYWII 426


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 55  NKNTRKIRDYVNCKLK 102
           +KN  K+  YV+C LK
Sbjct: 53  DKNDEKLACYVDCMLK 68


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 275 PGQINRIDRVRLFCSECIVCFCILFFIV 358
           P  I++  R+ +F   C VCF ++++I+
Sbjct: 339 PSDIDKYSRI-VF-PVCFVCFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,255
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)