Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22d01
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   2.1  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     28   6.3  
07_03_0109 + 13502604-13503059,13503729-13504682                       28   6.3  

>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 172  TMCI*ENRIKNNTRRKDCCKYFKKDYHTREES 267
            T CI  N   N ++ KD C    +D+HT + S
Sbjct: 1006 TDCISRNCCSNTSKGKDICSSLHRDHHTSQAS 1037


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 249 IIFFEVLAAVFPSCIILDTVFSDTHCLMVSKVLDFAV 139
           ++  E  A  F +  +  TVFSDT+  MV  VLD+ V
Sbjct: 220 MVVMETSAFNFSTTYVDSTVFSDTYKGMVPTVLDWTV 256


>07_03_0109 + 13502604-13503059,13503729-13504682
          Length = 469

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 221 TAASTSKKIITPGKSRPRQNKIIIDDFDICAIRH 322
           TA  +S +++TP +  PR+ K++ D  D   +R+
Sbjct: 6   TARRSSPELVTPARPTPRETKLLSDLDDQWTLRY 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,617
Number of Sequences: 37544
Number of extensions: 245313
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)