Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22d01
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb...    28   4.3  
AL034489-10|CAA22464.2|  272|Caenorhabditis elegans Hypothetical...    27   7.5  
AC006617-3|AAF39764.1|  322|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical
           protein F25D1.4 protein.
          Length = 882

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 578 TGLFSVVRFLRIFSIYLAH---QTIMSERSINIFLL 480
           T  + VV  L I   Y AH   +TI+ ERS N+FLL
Sbjct: 807 TPQYDVVNLLHI-KFYFAHFKQETILQERSYNLFLL 841


>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
           protein D2023.2 protein.
          Length = 1175

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 216 PSCIILDTVFSDTH-CLMVSKVLDFAVLVQKTPLLAVSFLG 97
           P C+I DT F D H  L+ ++V  +  +   +P +A SF G
Sbjct: 557 PGCMITDTTFRDAHQSLLATRVRTYD-MAAISPFVAQSFNG 596


>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
           carboxylase protein.
          Length = 1175

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 216 PSCIILDTVFSDTH-CLMVSKVLDFAVLVQKTPLLAVSFLG 97
           P C+I DT F D H  L+ ++V  +  +   +P +A SF G
Sbjct: 557 PGCMITDTTFRDAHQSLLATRVRTYD-MAAISPFVAQSFNG 596


>AL034489-10|CAA22464.2|  272|Caenorhabditis elegans Hypothetical
           protein Y7A5A.3 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 468 FVFKSIFFSIFYAMSS*RFPLKLMSCFNTAS 376
           ++FK+ FF+ FYA    RF L++  C  T +
Sbjct: 61  YIFKAEFFAAFYARKQPRF-LRVTKCSQTGN 90


>AC006617-3|AAF39764.1|  322|Caenorhabditis elegans Hypothetical
           protein C39B5.8 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 240 FEVLAAVFPSCIILDTVFSDTHCLMVSKVLDF 145
           F  + ++ P C   D V  D +CL++ KVLDF
Sbjct: 171 FNEILSILP-CFEAD-VLDDINCLLIGKVLDF 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,129
Number of Sequences: 27780
Number of extensions: 260104
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)