Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22d01
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.7  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   3.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 EDIA*NIEKNMDLNTNGASPKE 487
           E  A NIE N+D  TN A+ KE
Sbjct: 60  EGQAWNIEANIDSYTNAAAVKE 81


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 EDIA*NIEKNMDLNTNGASPKE 487
           E  A NIE N+D  TN A+ KE
Sbjct: 60  EGQAWNIEANIDSYTNAAAVKE 81


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 234 VLAAVFPSCIILDTVFSDTHCLMVSKVLDFAVLVQKTPLL 115
           +L A+ P C +L  VFS+         +D  V++    LL
Sbjct: 4   ILIALVPVCFLLGEVFSEDKYTTKYDNVDIDVVLNTERLL 43


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 234 VLAAVFPSCIILDTVFSDTHCLMVSKVLDFAVLVQKTPLL 115
           +L A+ P C +L  VFS+         +D  V++    LL
Sbjct: 4   ILIALVPVCFLLGEVFSEDKYTTKYDNVDIDVVLNTERLL 43


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 167 WYQKSLILLFWFRKRHYLQYHFSATTFYHFRH 72
           W+QK L+     RK +   YH      +H  H
Sbjct: 255 WHQKELVRRDSRRKNYGGVYHLDNHHVHHANH 286


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 579 DGSFFGGSILAH 544
           DG+ FGGS L H
Sbjct: 426 DGARFGGSCLIH 437


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 579 DGSFFGGSILAH 544
           DG+ FGGS L H
Sbjct: 426 DGARFGGSCLIH 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,898
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)