Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22c14
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    41   2e-04
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    31   0.22 
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    27   2.8  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    26   6.4  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   8.4  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   8.4  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 25/85 (29%), Positives = 43/85 (50%)
 Frame = +2

Query: 479 FSVIVTGATCDFQLDLSQTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIV 658
           FSV     T  F + L+ + + +++   G IA    W  +++  GRK  LLI M+G  I 
Sbjct: 154 FSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIF 213

Query: 659 SVASAFAPNWVFMAVMKFISTSFCS 733
           +++ A A +   + + +F S  F S
Sbjct: 214 NISVAVAKDIQTIMMCRFFSGFFAS 238


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +2

Query: 482 SVIVTGATCDFQLDLSQTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVS 661
           ++ V G+     L   Q  ++ S      +  A   G++AD  GRK  LL A     I S
Sbjct: 105 ALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGS 164

Query: 662 VASAFAPNWVFMAVMKFI 715
           V  A + N   M V +FI
Sbjct: 165 VIMAASRNVAMMVVGRFI 182


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -1

Query: 505 GGSCHDDGEAEHVDGHGQSRHTQRCH*TDAVPSVTSQINSFVIRVMPFIITGLADCPHCG 326
           G +  +   AE  +G+G       C   +   + T+++   VI     ++    +CPHCG
Sbjct: 14  GNAAQNVSTAEDREGNGVQEVESLC--MECGKNGTTKLLLTVIPYFREVVLMSFECPHCG 71

Query: 325 TLPSKAIVVTLISVSVLGTHYNTEETQALNCIKFKLHEIILNV 197
              ++      I        ++ E+ + LN    K  E I+++
Sbjct: 72  FKNAQVQHAETIQPEGSKITFHVEDKEDLNRTVVKSQEAIVSI 114


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 584 PWGYIADTKGRKTS---LLIAMWGSFIVSV-ASAFAPNWVFMAVMKFISTSFCS 733
           P       K RK S   L +  WG FI+ + A+  + N+ + A + F S SFC+
Sbjct: 144 PLSVTKSRKWRKASYGLLGVFTWGLFIICLSATVLSSNFAWAAFLGF-SASFCA 196


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 362 ERHYPYNEAINLAGNGRY 415
           ++H PY E  NL+G  RY
Sbjct: 167 KQHIPYREKKNLSGTARY 184


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 720 VLMNFITAMNTQFGAKALATET 655
           VL+N + A NTQ G  AL+  T
Sbjct: 260 VLLNHLAAANTQLGVLALSATT 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,550
Number of Sequences: 5004
Number of extensions: 63752
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)