Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22c14
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 588 HGYAIAIGPTNGI 550
           HGYA  +GP  GI
Sbjct: 618 HGYASVVGPVKGI 630


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 714 MNFITAMNTQFGAKALATETIKLPHMAISR 625
           + F+T   T  G    A+  IKLP +A +R
Sbjct: 264 LGFLTFCPTNLGTTVRASVHIKLPKLAANR 293


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +2

Query: 254  FSVIMSAQDRYRYKGDDDGFGRKSSTVWTVSKPSNDERHYPYNEAI 391
            F   +  +D     G D G    S T  TVS+     R   Y + +
Sbjct: 1056 FETKLVLEDGITSSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLV 1101


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 332 VWTVSKPSNDERHYPYNE 385
           VW +  P+    HYP  E
Sbjct: 785 VWMIIDPAKAMHHYPTRE 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,011
Number of Sequences: 438
Number of extensions: 4412
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)