Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22c13
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    71   2e-13
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    43   5e-05
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    29   0.88 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    28   1.5  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.6  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   3.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   4.7  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.2  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   8.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
 Frame = +1

Query: 163 EVEALDSIYFGDMTVIETKPFHKFSIPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEI 342
           E E L+SIY  +   I    F + + PI  E  +     +       +  YPDE+P ++I
Sbjct: 8   EREILESIYPEEFKCINDSTF-EITQPIDREESNCDNPPSLIFTCQLSEAYPDEVPDVKI 66

Query: 343 DNEENFDNIVDKE--ELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKEREERI 516
              E    + ++E   L   +A+  +E LGM M+F+L S  +E  N    +  +   + I
Sbjct: 67  TFSEPHPWLGEEEIERLKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAI 126

Query: 517 LAKQKADEEAELKRFEGTRVTVESFLAWRKQFE 615
             + + + E E K+F GT VTVESF  W+K F+
Sbjct: 127 EERHRKEAEQENKKFHGTPVTVESFTEWKKGFD 159


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
 Frame = +1

Query: 154 QTSEVEALDSIYFGDMTVIETKPF------HKFSIPIKSEGFDDGEGLACHLVFTYTSKY 315
           Q +E+EAL +I+  D   ++ +        H + I + S   +        L       Y
Sbjct: 14  QENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIELGRSY 73

Query: 316 PDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVK 495
           P   P+I++ N EN  N   +  LL  L  + K+ LG  M+F L S  Q++LN+    + 
Sbjct: 74  PYVKPVIKLQNGENVLNSQIRF-LLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSDLS 132

Query: 496 KE----REERILAKQKADEEAEL 552
            +     EER +  +   E AE+
Sbjct: 133 SQFASLEEERAVQLKHDRERAEV 155


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
 Frame = +1

Query: 331 IIEIDNEENFDNIVDKEELL-THLAEQGKENLGMVMVF---TLVSAGQEWLNETWDKVK- 495
           ++E+DNEE+ D    +E L+ THL E  ++   +   +    L+S+G    +  + +V  
Sbjct: 323 VVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNP 382

Query: 496 --KEREERILAKQKADE-EAELKRFEGTRV 576
             K  EER L ++K  + EAE+K     +V
Sbjct: 383 SAKLEEERALHEEKLMKMEAEMKTIFSQKV 412


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +1

Query: 484 DKVKKEREERI-LAKQKADEEAELKRFEGTRVTVES 588
           +K KKEREE++ L ++ AD++AE+   E +  T E+
Sbjct: 407 EKKKKEREEQVRLLQESADKDAEMN--EASTATSEN 440


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 392 HILLNRVKKTWEWSWYSH*CQLDKSGLMRLGIKLRKSVKK 511
           H+ +N+  +  +WS+Y+H  +  +  L+ +   LR + KK
Sbjct: 183 HLKVNKYTEPLDWSYYAHNLERIEDLLVEMEENLRPTKKK 222


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 412 KENLGMVMVFTLVSAGQEWLNETWDKVKKEREERIL--AKQKADEEAELKRFEGTRVTVE 585
           KE+L M    T  +A  E  +E ++  ++E  ER +  + + +DEEAELK+ E     VE
Sbjct: 27  KEHLRM----TQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVE 82

Query: 586 SFL 594
             L
Sbjct: 83  KIL 85


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 532 ADEEAELKRFEGTRVTVESFLAWRKQF-EIDMGNPS 636
           +D++ +L   E     +E+F AW  +F E   GNPS
Sbjct: 841 SDDDLKLMNEEEIMEQIETFKAWSMKFKEKSSGNPS 876


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 556 FSVLPLHLPFVWLVSFLHALS 494
           FS + + LPF+ L+SFLH  S
Sbjct: 147 FSPIIITLPFIALISFLHLRS 167


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 493 KKEREERILA-KQKADEEAELKR 558
           +KERE++ L  KQ+ DE+ ELK+
Sbjct: 33  EKEREKKYLQEKQQKDEQRELKK 55


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 344 TMRRISTILLIKRNFSHILLNRVKKTWEW 430
           T+  ++ ++LI  N SH+     K  W W
Sbjct: 846 TLANLAPMMLITHNASHVPPRPSKSLWNW 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,227
Number of Sequences: 5004
Number of extensions: 60137
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)