Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22c07
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    31   0.11 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    29   0.76 
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.0  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    28   1.0  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.0  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   2.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   5.4  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   7.1  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   7.1  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    25   7.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.4  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   9.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.4  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 515 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 634
           ++  Q+ L  P +   IV  +   Q+ TV EVGPG G +T
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLT 65


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 114 CKQDSLGSSKLFENIV*PQKSKI 46
           CK + +    LF NIV PQK KI
Sbjct: 17  CKPEKVNKQNLFTNIVKPQKDKI 39


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 114 CKQDSLGSSKLFENIV*PQKSKI 46
           CK + +    LF NI+ PQK KI
Sbjct: 17  CKPEKVNKQNLFTNIIKPQKDKI 39


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 114 CKQDSLGSSKLFENIV*PQKSKI 46
           CK + +    LF NI+ PQK KI
Sbjct: 37  CKPEKVNKQNLFTNIIKPQKDKI 59


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 114 CKQDSLGSSKLFENIV*PQKSKI 46
           CK + +    LF NI+ PQK KI
Sbjct: 17  CKPEKVNKQNLFTNIIKPQKDKI 39


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 559 QNSACLR*YSESYRL*SWTRPGWNN 633
           +NSAC R Y E+ R  SW+R   NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 197 STRSSAQAGRNSLYEINRREKSRTRSKITSD 289
           S R    A R++L + NR+ KS+ +  ITSD
Sbjct: 31  SRRKGKSALRSALEKKNRKSKSKPKVTITSD 61


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +2

Query: 311 GLHDRSRSVGCLLVFYLRHQTGDVP*RFRRAPENTAVIMAVAKTALQIRLPPLPSIKDVI 490
           G H  S++V   LV  L H +G V    +  P N        K  L + + P+ + K + 
Sbjct: 305 GSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLHLIVEPMVARKQLT 364

Query: 491 KLYKL----RALRELSQNFLMEPRLID 559
             Y +    + L EL    ++ P + D
Sbjct: 365 NNYLINFITQKLVELVHETIVMPNMND 391


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 270 VQKLQVISKRNRLTGFTIGAGVLGV----YLYSIFAIKQETFLDDFDEPPKI 413
           +  L++    ++ T   IGAG+ G+     L ++FA  ++ FL   ++PP+I
Sbjct: 246 ISSLKLDESLSQKTVAIIGAGMAGISCARQLTNLFAQYEQDFLSRGEKPPRI 297


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 373 RRRSLTISTSPRKYSSNHGRR*NCITDKAASTT 471
           +  S + + SPR+  S HG R  C++  A+S++
Sbjct: 498 KNHSKSNTLSPRRKGSRHGPREPCLSPDASSSS 530


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 36  YISKFSIFEVTLYFRIISNYLMSLVCI 116
           Y+S+ S+   TL++ +IS +L+ ++ I
Sbjct: 75  YLSQLSVTNQTLFYALISQHLIEMIPI 101


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 137 ISKVYFRNGRLRI*TENQRYSTRSSAQAGRNSLYEINRREKSRTRSKITSDFETQSTDGL 316
           + K YF+   + I  ++ R     S    R   Y  + R++ R+ S+       + +DG 
Sbjct: 298 VEKAYFKMQNVLI--DDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRSDGR 355

Query: 317 HDRS 328
           +DRS
Sbjct: 356 YDRS 359


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 165 DSAYKPKISGTQQDPVLKQAEIAYMKLIEERNRERVQKLQV 287
           +S+Y    S   +  +LK   +   + +EE+N+ERV  L++
Sbjct: 371 NSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALEL 411


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 365 GEDRIQVNTQHSGSYREARQSIAFRNHL*FLNAFAISLFD*FHISYFGLLEHW 207
           G +R +     S  ++   QS+   N +  L   +IS      +S++G LEHW
Sbjct: 165 GPERSKQAIDKSFLFQRLVQSVWNDNPISALAELSISFLSYSILSHYGALEHW 217


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 159 MGDSAYKPKISGTQQDPVLKQAEIAYMKLIEERNRERVQKLQVISKRNR 305
           + +S YK  +   Q   +L Q +   +++++   +   ++LQ +SK N+
Sbjct: 462 LAESTYKELMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQ 510


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 512 LRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSI 643
           L EL+ N     R +D I R    +++  VC VG GP G++ +I
Sbjct: 71  LNELTDNL----RKLDTIER---EVEDVDVCIVGAGPAGLSAAI 107


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  CLWITYPNFRFLRLHYIFE*FRTT**VLFALINITCYYL 141
           C  + YP    +R+HY+ E    T   +F L+ I+ +++
Sbjct: 249 CYQLYYPRTAHVRIHYLIECALGTFGCIFLLVIISDHFM 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,889
Number of Sequences: 5004
Number of extensions: 54647
Number of successful extensions: 158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)