Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22c07
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0111 + 5381779-5382117,5382775-5382798                           39   0.004
07_03_0548 + 19349943-19350290,19350372-19351100                       36   0.028
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120...    34   0.11 
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319...    30   1.4  
06_03_0102 - 16662937-16663245                                         28   7.4  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    28   7.4  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   7.4  

>10_02_0111 + 5381779-5382117,5382775-5382798
          Length = 120

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 527 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSII 646
           Q+ L  P L+D IV  +G     TV E+GPG G +T+ ++
Sbjct: 40  QHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLL 79


>07_03_0548 + 19349943-19350290,19350372-19351100
          Length = 358

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 500 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 634
           + R  +   Q+ L  PR++D IVR +       V EVGPG G +T
Sbjct: 34  RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLT 78


>02_01_0175 -
           1198657-1198737,1199080-1199190,1199488-1199540,
           1200131-1200215,1200519-1200614,1200729-1200821,
           1201640-1201696,1201826-1201975,1202819-1202893
          Length = 266

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +2

Query: 527 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSII 646
           +N+++  ++ +++V A+G  +   V E+GPG G +T +++
Sbjct: 25  ENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALL 64


>06_03_1032 +
           27029698-27029785,27030640-27031275,27031739-27031993,
           27032451-27032605,27032704-27032783,27032891-27033026,
           27033228-27033377,27033474-27033641
          Length = 555

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 404 PENTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALRE-LSQNFLMEPRLIDKIVRASG 580
           PE  A I+AVA   +       PS+K V++   L+  RE L    +  P+L+  ++  SG
Sbjct: 474 PEEMAHILAVASMCIHHSSSSRPSMKSVVRF--LKGDRESLEMMQMQRPKLMKPLMFDSG 531

Query: 581 NIQNHT 598
           + +++T
Sbjct: 532 DSEDYT 537


>06_03_0102 - 16662937-16663245
          Length = 102

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 527 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPG 625
           Q+ L  P L+D IV  +G     TV E+G   G
Sbjct: 39  QHILRNPALVDSIVEKAGLKPTDTVLEIGSARG 71


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 348 LYSIFAIKQETF-LDDFDEPPKIQQ*SWPSL 437
           L +IF +K+ET  LD+ DE  ++ + +WP+L
Sbjct: 320 LQAIFDLKEETVVLDEVDELLELMRRTWPTL 350


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 132 LLSLKFISVMGDSAYKPKISGTQQDPVLKQAE 227
           L +L+ + V GD+AY   +   ++DP LK+ E
Sbjct: 179 LTTLRAVPVGGDAAYVAVLVNRERDPALKRLE 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,612
Number of Sequences: 37544
Number of extensions: 313898
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)