Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b22
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832...    29   0.93 
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156...    27   2.8  
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073...    27   3.8  
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307...    26   6.6  
12_01_1066 - 10998305-10998473,10998759-10998910,10999051-109992...    26   8.7  

>05_03_0089 -
           8327044-8327142,8327238-8327306,8327413-8327504,
           8327932-8329042
          Length = 456

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 197 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 87
           +G V+  F     V+EI +  P+ T  + +KRPMW+G
Sbjct: 242 LGAVSFAFAGHNVVLEIQATIPS-TPERPSKRPMWRG 277


>08_01_0185 +
           1558580-1558755,1558848-1559737,1559828-1559919,
           1560018-1560086,1560218-1560316
          Length = 441

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 197 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 87
           +G V   +     V+EI +  P+ T  + +K+PMWKG
Sbjct: 227 LGDVAFAYAGHNVVLEIQATIPS-TPEKPSKKPMWKG 262


>08_02_0379 -
           16506775-16506950,16507037-16507096,16507187-16507375,
           16508131-16508224,16508276-16508300,16508690-16508796,
           16508903-16509021,16510520-16510658
          Length = 302

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 114 LHRGLIGFWRGYFNHKSTRRK*HCNFSNCT*YGIC 218
           LH G++G W  +   K  R K   NF+N T   IC
Sbjct: 110 LHHGILGIWYSHILSKLYRNK---NFNNVTGDVIC 141


>06_01_0433 -
           3078576-3078780,3078797-3078951,3079782-3079821,
           3079957-3080009,3080091-3080199,3080324-3080448,
           3081112-3081201,3081280-3081342,3081453-3081544,
           3081641-3081722,3081913-3082086,3082183-3082264,
           3083100-3083224,3083312-3083389,3084047-3084402,
           3085311-3085608
          Length = 708

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 28  RINISLIYIGRNKPGFAGW 84
           R NI  + +G   PGF GW
Sbjct: 475 RDNIQFVMLGSGDPGFEGW 493


>12_01_1066 -
           10998305-10998473,10998759-10998910,10999051-10999209,
           10999334-10999595,10999913-10999975,11000701-11000876
          Length = 326

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 160 KVLGGNNIVTFPTVHNM-VSVFVIC 231
           + +GG++  TFPT HNM +    +C
Sbjct: 130 RAIGGSDDSTFPTHHNMLIGTLFLC 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,516,929
Number of Sequences: 37544
Number of extensions: 148945
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)