Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b22
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   4.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   4.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.1  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 118 TEV*LGSGEAISITKVLGGNNIVTFPTVHNMV 213
           TEV +G G   S  +  G     T  TV+  +
Sbjct: 280 TEVTIGGGGTTSSRRTTGSRAAATTTTVYQFI 311


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 118 TEV*LGSGEAISITKVLGGNNIVTFPTVHNMV 213
           TEV +G G   S  +  G     T  TV+  +
Sbjct: 280 TEVTIGGGGTTSSRRTTGSRAAATTTTVYQFI 311


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 118 TEV*LGSGEAISITKVLGGNNIVTFPTVHNMV 213
           TEV +G G   S  +  G     T  TV+  +
Sbjct: 280 TEVTIGGGGTTSSRRTTGSRAAATTTTVYQFI 311


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 163 VLGGNNIVTFPTVHNMV 213
           VLG N I+TF T+ + V
Sbjct: 265 VLGTNTILTFMTLASKV 281


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 166 LGGNNIVTFP 195
           L GN +VTFP
Sbjct: 897 LSGNRLVTFP 906


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,985
Number of Sequences: 438
Number of extensions: 1717
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)