Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22b17
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1446 - 30220158-30220278,30220866-30222229 29 4.2
06_03_1434 - 30139990-30140110,30140698-30142061 29 4.2
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 28 5.6
09_01_0154 + 2298432-2299415 28 5.6
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 28 7.4
01_06_1592 + 38495121-38495305,38496378-38496459,38496652-384967... 28 7.4
11_03_0157 + 10897769-10898066,10898308-10899461 27 9.8
04_04_1553 - 34363848-34366058,34369087-34370451 27 9.8
04_04_1550 - 34332948-34335986 27 9.8
>06_03_1446 - 30220158-30220278,30220866-30222229
Length = 494
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 183 SLLRRPGMWFVKWTPQMS*HSFESEVEDMRYSLH 284
S +RRPG W WT + S+E D +LH
Sbjct: 338 SSVRRPGQWLTTWTMPIPVTSWEDWRPDCTANLH 371
>06_03_1434 - 30139990-30140110,30140698-30142061
Length = 494
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 183 SLLRRPGMWFVKWTPQMS*HSFESEVEDMRYSLH 284
S +RRPG W WT + S+E D +LH
Sbjct: 338 SSVRRPGQWLTTWTMPIPVTSWEDWRPDCTANLH 371
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 332 FNPMCSV*QLI*ILCPVQ*VSHVFDF*LEGMSTHLWSPFHE 210
F PM + + I LC + +H ++F S+ LW PFHE
Sbjct: 69 FYPMEGLLEKIDHLCKAR--NHAYNFEFWPFSSALWKPFHE 107
>09_01_0154 + 2298432-2299415
Length = 327
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/97 (25%), Positives = 40/97 (41%)
Frame = -2
Query: 321 VFCITINMNSLSGAMSISCLRLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALS 142
V ++I ++S G + L L R + + + T +A V I P Y ALS
Sbjct: 206 VIPVSIAVSSAEGRWAAPALWLAWRL-MKARRKEAGVLTLIACLVPAAICPVYTIAAALS 264
Query: 141 NELLIGIPSWFTMTTPITPLWAWILLIVSSTSVAIMY 31
+ELL W L L ++S+T+ + Y
Sbjct: 265 DELLFTFYVWLLGVVFGFFLLPVALQLLSTTAATVFY 301
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 195 FSVSCPISPAYNTEVALSNELLIGIPSWFTMTTPITP 85
F +S P++ +N E S +L +P+ FT+ ITP
Sbjct: 40 FDIS-PVNYEFNVEAMSSEKLAFNLPAVFTIGPKITP 75
>01_06_1592 +
38495121-38495305,38496378-38496459,38496652-38496716,
38496914-38497013,38497300-38497341,38497486-38497527,
38497651-38497932
Length = 265
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 137 SLDNATSVLYAGLIGQLTEKARNVVREMDSTNELTFLRVRSRRHEILIA 283
+L NA L IG +T K ++ +++ E R+RS++HE+L +
Sbjct: 105 TLQNANRHLIGESIGNMTAKE---LKSLENRLEKGISRIRSKKHELLFS 150
>11_03_0157 + 10897769-10898066,10898308-10899461
Length = 483
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 252 TRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALS---NELLIGIPSWFTMTTPIT 88
TR +V SF + T LAF + P+ ++++ LS + I W T+ TP+T
Sbjct: 303 TRVSVASFAVVTALYTALAFVGASMFGPSVSSQITLSMPPGLAVTRIALWATVLTPVT 360
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 312 ITINMNSLSGAMSISCLRLLTRRN 241
+++ NSLSG ++I C RLLTR N
Sbjct: 764 VSLRNNSLSGEITIDC-RLLTRLN 786
>04_04_1550 - 34332948-34335986
Length = 1012
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 312 ITINMNSLSGAMSISCLRLLTRRN 241
+++ NSLSG ++I C RLLTR N
Sbjct: 296 VSLRNNSLSGEITIDC-RLLTRLN 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,218,453
Number of Sequences: 37544
Number of extensions: 326022
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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