Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b16
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    31   0.12 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    29   0.86 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   6.0  

>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 270 EHCRQWAQHGSCAYGKSCKFA 332
           E C+ W   G+C YG  C+FA
Sbjct: 330 EPCKNWQISGTCRYGSKCQFA 350



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 270 EHCRQWAQHGSCAYGKSCKF 329
           E CR +  +G C YG  C F
Sbjct: 368 ERCRSFMMYGYCPYGLRCCF 387


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 630 KTYWTRLFFYLFACLCLNPFSSVILVHAATAVFVFRGHLCLHTLSHF 490
           + Y T LFF L     +   SS ++VH  T V ++   +C+ +L  F
Sbjct: 578 EAYRTHLFFLLLDTKPVYKASSTLIVHLRTLVIIY-NRVCIESLLAF 623


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 276 CRQWAQHGSCAYGKSCKF 329
           C+ +   G C YG +CKF
Sbjct: 190 CKDYKLTGYCGYGDTCKF 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,543
Number of Sequences: 5004
Number of extensions: 41918
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)