Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b16
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0049 - 25953811-25954131,25954223-25954903                       33   0.17 
05_07_0220 + 28482589-28483752                                         32   0.51 
01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152           29   2.7  
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245...    29   3.6  
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371...    29   4.8  
03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669     29   4.8  
02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141     29   4.8  
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    28   6.3  

>01_06_0049 - 25953811-25954131,25954223-25954903
          Length = 333

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 EHCRQWAQHGSCAYGKSCKFASTHTLISPSKQRAAHK 380
           E C +W + G C YG  C+FA   T + P  +   +K
Sbjct: 262 ELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYK 298


>05_07_0220 + 28482589-28483752
          Length = 387

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 EHCRQWAQHGSCAYGKSCKFA 332
           E C +W + G+C YG  C+FA
Sbjct: 316 ELCNKWEETGACPYGDQCQFA 336


>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
          Length = 205

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 276 CRQWAQHGSCAYGKSCKF 329
           C  + QHG C +G +CKF
Sbjct: 90  CAYYTQHGFCKFGPTCKF 107


>02_05_1264 +
           35321972-35322448,35323022-35323252,35323903-35324565,
           35324698-35324806,35324965-35325383
          Length = 632

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 366 RAAHKDNDQKRLVKDDGK-TRLHSTVIVRSGQSPEGEIDNWDQNDLEYADTD 518
           R   K   + R V   GK   +  T++  SG++P+G+  NW  ++    D D
Sbjct: 105 RGYWKTTGKDRDVHHRGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRLLDAD 156


>12_01_1022 -
           10435409-10435564,10435950-10436219,10436820-10437125,
           10437932-10438057,10439825-10439893,10440443-10440487,
           10440717-10440776,10441527-10441589,10442186-10442266,
           10442494-10442916
          Length = 532

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 270 EHCRQWAQHGSCAYGKSCKF 329
           E C+ ++  G C +GK+CK+
Sbjct: 244 EECKYYSTPGGCKFGKACKY 263


>03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669
          Length = 457

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 EHCRQWAQHGSCAYGKSCKFA 332
           E C +W + G+C YG  C+FA
Sbjct: 386 ELCNKW-ERGACPYGARCRFA 405


>02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141
          Length = 352

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 276 CRQWAQHGSCAYGKSCKF 329
           C+ + + G C YG SCKF
Sbjct: 193 CKDYKETGYCGYGDSCKF 210


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 276 CRQWAQHGSCAYGKSCKF 329
           C  +AQ+G C YG +CK+
Sbjct: 359 CAYYAQNGYCRYGVACKY 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,677
Number of Sequences: 37544
Number of extensions: 244214
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)