Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b15
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    39   8e-04
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        37   0.003
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    32   0.069
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   2.6  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    27   2.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.5  

>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -3

Query: 476 IIEQATDGALPSENWALNMEICDIINS-STDGPKDAIKAIRKRLTTSAGKNYTVVMYTLT 300
           +I QATD     E W + M+ CD ++S S D  +++IK + KRL T A  N  ++  TLT
Sbjct: 12  LILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDT-ANANIQLLALTLT 70


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 488 TLILIIEQATDGALPSENWALNMEICDIINSST-DGPKDAIKAIRKRLTTSAGKNYTVVM 312
           TL   I++ATD      N ALN+EI D+IN    + P++A   I KR+ ++      + +
Sbjct: 6   TLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSYLAL 65

Query: 311 YTLTVPLKN 285
           + L + +KN
Sbjct: 66  HLLDICVKN 74


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 677 FHER--STFSFCCALQDSNFLCSAIAVFAYKCYIPQYIRTF 561
           FH R  ++ S C AL    F CS +  FA+ C +P ++ +F
Sbjct: 68  FHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVDSF 108


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 KLSNYSMVQFFKGTVSVYITTV*FFPALVVNLFLIALMASLGP 387
           +  N + VQ F      Y +   FFP L+++L  +  + S+GP
Sbjct: 4   EFENGAPVQQFVSRFRSYSSKFLFFPCLIMSLVFMQWLISIGP 46


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/63 (20%), Positives = 31/63 (49%)
 Frame = -3

Query: 473 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVP 294
           I++ T      E+ +  +++ + +N +  GP++A + +RK+L  S        +  L   
Sbjct: 17  IDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKYSTPHEQVRALVILQAL 76

Query: 293 LKN 285
           ++N
Sbjct: 77  IEN 79


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 486 CKHTSDREVKIINRYIIF----DFFLIL*KCSYILRYVTFVCEYR 608
           C  T D+     NRY+IF    DF L       ILR+  ++ +YR
Sbjct: 534 CTQTYDQTSSTANRYLIFYACVDFLL---AAEVILRFFAYLPDYR 575


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 KVLCCPDINSAKQFSHLVQRVEQLIGIEIYSSYL 144
           K+LC P+++S+ +   LV ++   I I +Y  +L
Sbjct: 768 KILCTPEVDSSYKPKVLVSQIWNSIIISLYREHL 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,122
Number of Sequences: 5004
Number of extensions: 63740
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)