Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b11
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...   100   2e-22
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   5.1  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score =  100 bits (240), Expect = 2e-22
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
 Frame = +1

Query: 337 LSQNHFDGLKKYKYSAIDTSPLSNYVMHPSW-NFITRFIPKWIAPNLITFAGLVCMVIVI 513
           L++     L  YKYSAID S LS Y++ P W N + + IP  +APNLIT  GL  +VI I
Sbjct: 3   LNRKQLKNLHNYKYSAIDNSLLSKYILKPYWWNQLLKVIPMSMAPNLITLIGLGFVVINI 62

Query: 514 LLLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPL 693
           L + ++ Y +         +D +  P+W   +  + LFL  + D IDG QAR+ G S PL
Sbjct: 63  LTMLVYKYHYE--------MDAF--PSWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPL 112

Query: 694 GELFDHGL 717
           G+LFDHG+
Sbjct: 113 GQLFDHGV 120


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 406 NYVMHPSWNFITRFIPKWIAPNLIT----FAGLVCMVIVILL 519
           NY + P+  F T+F+   I P + T     +GLVC+ +V L+
Sbjct: 833 NYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLV 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,170
Number of Sequences: 5004
Number of extensions: 69930
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)