Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b11
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    58   6e-09
02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104...    41   0.001
06_02_0233 + 13315579-13316046                                         30   2.3  
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039...    28   9.3  

>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +1

Query: 589 PNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLGELFDHG 714
           P W  +A G+LLFL    D +DGKQAR+   S PLGELFDHG
Sbjct: 122 PRWVHLAHGLLLFLYQTFDAVDGKQARRTSSSSPLGELFDHG 163



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 334 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWI 462
           Y+  +  + LK+Y+YS  D S ++ YV+ P W+      P W+
Sbjct: 3   YIGAHGVETLKRYRYSGQDHSVVAKYVLQPFWSRCVTLFPLWM 45


>02_01_0145 +
           1040798-1040934,1041152-1041194,1041999-1042076,
           1042444-1042544,1042900-1042994,1043161-1043229,
           1043432-1043501,1043757-1043820,1043907-1043947,
           1044098-1044182,1044608-1044682
          Length = 285

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 334 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLIT 480
           Y+ Q+    L++YKYS +D S ++ Y++ P W+      P W   + I+
Sbjct: 3   YVGQHGVATLRRYKYSGVDHSLVAKYILQPFWSRFVNLFPLWFPDSSIS 51


>06_02_0233 + 13315579-13316046
          Length = 155

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 636 QSRWYRRKASSEAWRVRPAGRTLRSR 713
           +SRW RR A  E  R RPA R  RSR
Sbjct: 87  RSRWQRRPARRERRRWRPAWRERRSR 112


>07_02_0030 +
           12002825-12003510,12003654-12003708,12003911-12003996,
           12004093-12004433,12004512-12004699,12004776-12004962,
           12005035-12005139,12005202-12005239,12005369-12005653
          Length = 656

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 342 RQIFILEEFFHGRYTFPSDPFF 277
           R++ +   FF+GR++ P+  FF
Sbjct: 53  REVVVFSHFFYGRFSLPTSRFF 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,919,611
Number of Sequences: 37544
Number of extensions: 412101
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)