Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b04
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    32   0.083
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   3.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   9.5  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 402 GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 515
           G + C +C     +  ++L H  GKKHQ NL     +E
Sbjct: 52  GTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALE 89


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 414 CNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSSLDQVK 539
           C VC+   +      +H N KKH++NL  M+ +I++ + +  K
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQK 314


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 456 LDHINGKKHQRNLGMSMKIERSSLDQVKARFAL 554
           ++H+  ++ QRNL +        +++ + RFAL
Sbjct: 234 MEHLRERQEQRNLELQRNGSFEEIERARQRFAL 266


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 357 GKSVVINK-NTPTSQSGGYY--CNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSS 524
           GK + I K N    +   +Y  C VC+        +  H+  KKH+ NL    K +R+S
Sbjct: 50  GKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLS---KFQRNS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,855
Number of Sequences: 5004
Number of extensions: 40846
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)