Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22b04
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287... 136 2e-32
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 36 0.028
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 0.60
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 29 2.4
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 29 3.2
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 28 5.6
12_02_1240 + 27280583-27281101,27281500-27282138 27 9.8
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 27 9.8
>03_06_0561 +
34728428-34728439,34728529-34728615,34728729-34728750,
34728843-34728925,34729139-34729171,34729468-34729546,
34729642-34729694,34729931-34729991,34730168-34730250,
34730418-34730513
Length = 202
Score = 136 bits (328), Expect = 2e-32
Identities = 63/116 (54%), Positives = 79/116 (68%)
Frame = +3
Query: 201 RRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTPVKRELLKQREYKVDLDSRLGKSVVINK 380
RRK+DKEE+ PV+R+ LK R+Y+VDL+SRLGK+ V+
Sbjct: 13 RRKFDKEEYLERARQREREEKEEARKGKEKGPPVQRQPLKHRDYEVDLESRLGKTQVVTP 72
Query: 381 NTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARF 548
P SQ GYYC VC+CVVKDS N+LDHINGKKHQR LGMSM++ER+SL+QV+ RF
Sbjct: 73 IAPLSQQAGYYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQKRF 128
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 345 DSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM 506
D KSV I+ T Q Y+C VC DH++GKKH + L + +
Sbjct: 342 DGSSSKSVKISA-TMDKQKATYFCEVCSLKCTSQRMLADHLSGKKHIKQLELQL 394
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 414 CNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSSL 527
C VC+ N DH G+KHQ + G+ +K + +++
Sbjct: 104 CAVCEVQTSSERNLRDHYGGQKHQSKVAGLELKAKTATV 142
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 387 PTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 494
P Y C +C + + N+L H GK+HQ NL
Sbjct: 75 PLDFVSSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 110
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 414 CNVCDCVVKDSINFLDHINGKKHQRN 491
C++C+ +F H+ GKKHQ N
Sbjct: 166 CSICNISCNGECDFDTHLKGKKHQAN 191
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 372 INKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERS 521
+ K+ P S + C VC N DH G+KHQ + K ++
Sbjct: 102 VQKSMPPS---AWSCAVCQVRTTSERNLRDHCGGQKHQSKVAALEKTTKA 148
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 414 CNVCDCVVKDSINFLDHINGKKHQRNLGMS 503
C +CD ++ +N H GK+H L +S
Sbjct: 230 CQLCDVLLASELNVAQHYAGKQHLHRLRLS 259
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 375 NKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQ 485
N + Q+ YYC++C+ H+ GK+H+
Sbjct: 371 NSSAHHHQNRMYYCDICEVRCSSEKMMASHLAGKRHR 407
>12_02_1240 + 27280583-27281101,27281500-27282138
Length = 385
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -1
Query: 208 FLRWSSGRILMFKFYSIYFTTITSYDFLTHSTCLFYIKRVPR-----GKSNQLDLLKK*H 44
F S GR L +SIY + Y+ +T +FY ++VP G++N D ++
Sbjct: 135 FFNGSGGREL----FSIYVHSTPGYNPDFPTTSVFYRRQVPSQVAQWGQTNMFDAERRLL 190
Query: 43 EKIILNNTNEMFLI 2
+L+ NE F++
Sbjct: 191 ANALLDGGNERFVL 204
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 204 FGGHRGAYSCLNF 166
F GHRGA SCL+F
Sbjct: 257 FSGHRGAISCLSF 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,285
Number of Sequences: 37544
Number of extensions: 224275
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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