Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22b04
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical pr...   140   8e-34
Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical p...    30   1.6  
AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   5.0  
U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth...    27   8.7  
AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopente...    27   8.7  

>L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical
           protein ZK686.4 protein.
          Length = 217

 Score =  140 bits (339), Expect = 8e-34
 Identities = 66/124 (53%), Positives = 86/124 (69%), Gaps = 4/124 (3%)
 Frame = +3

Query: 195 DHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTP----VKRELLKQREYKVDLDSRLGK 362
           +HRR WD++E+                            VKRE+L+ REYKVDLDS++GK
Sbjct: 15  NHRRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGK 74

Query: 363 SVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKA 542
           SVVI K TP++++GG+YC+VCDCVVKDSINFLDHINGK HQRN+GMSMK ++S++  V+ 
Sbjct: 75  SVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRE 134

Query: 543 RFAL 554
           RF L
Sbjct: 135 RFKL 138


>Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical
           protein F11A10.2 protein.
          Length = 222

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 402 GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERS 521
           G Y C +C  +  +  ++L H  GKKHQ NL      E+S
Sbjct: 52  GTYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEQS 91


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 354 LGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQ 533
           +G+  V  +   T +   ++C +CDC   D      HI G++H+  +    KI+ + +  
Sbjct: 157 VGEEHVTEERDATGKLVQFHCKLCDCKFSDPNAKEIHIKGRRHR--VSYRQKIDPTLVVD 214

Query: 534 VK 539
           VK
Sbjct: 215 VK 216


>Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical
           protein T04A8.10 protein.
          Length = 234

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 399 SGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 494
           +G   C VC+  +K  I +  H+NGKKH+ ++
Sbjct: 13  NGNIQCLVCNAEIKPKI-WTAHVNGKKHRDSI 43


>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 408 YYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARFALN 557
           ++C +C    +D+  F  H+  + HQR L +  +   S L Q    F  N
Sbjct: 26  FFCQMCQKQCRDANGFKCHLTSEAHQRQLLLFAENSNSYLRQFSNDFEKN 75


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 393  SQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 515
            S+SG  +C +CD      ++  DH+  ++H   L  ++K E
Sbjct: 1412 SRSGELHCEICDKTFATRLSLQDHLFAEQHIEFLRNNLKRE 1452


>Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.7 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 378 KNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQR 488
           K+  T  SG + C VC+ V+       +H+N +KH++
Sbjct: 67  KSLTTKGSGAWKCPVCELVIPTEKGLKNHMN-QKHRK 102


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 411 YCNVCDCVVKDSINFLDHINGKKHQRN 491
           YC  C   +K      DH+  KKH+ N
Sbjct: 72  YCKACRKSIKSENAMTDHVASKKHKEN 98


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 184 ILMFKFYSIYFTTITSYDFLTHSTCLFYIKRVPRGKSNQLDLLKK*HEKII 32
           ++   FY I FTTI   D++  S  L     +PR  +   D +K   EK I
Sbjct: 489 VISASFYWIMFTTILRIDYIDFSLILTNPGVLPRSTTPFKDFIKDLEEKQI 539


>U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth
           rate protein 1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 414 CNVCDCVVKDSINFLDHINGKKHQRN 491
           C +C+  +    N+  HI+GKKH+ +
Sbjct: 394 CEICNISMTGKDNWQKHIDGKKHKHH 419


>AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopentenyl
           transferase protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 414 CNVCDCVVKDSINFLDHINGKKHQRN 491
           C +C+  +    N+  HI+GKKH+ +
Sbjct: 394 CEICNISMTGKDNWQKHIDGKKHKHH 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,716
Number of Sequences: 27780
Number of extensions: 225658
Number of successful extensions: 526
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)