Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22a21
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    46   6e-06
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    43   4e-05
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    42   7e-05
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    41   2e-04
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    40   4e-04
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    37   0.002
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    31   0.17 
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           30   0.23 
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    29   0.71 
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   1.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   3.8  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   3.8  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   6.6  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   6.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.7  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGFLFNGPF 600
           G I+  +VW  LS+  GR+  ++ G F  G+  ++ A++ +  T+++ RF SGF  + P 
Sbjct: 182 GYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPL 241

Query: 601 AVL 609
            V+
Sbjct: 242 TVV 244


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGFLFNGPF 600
           G  S  ++W  +S+ +GR+  ++ G F   +  +  A++ +  T+++ RF SGF  + P 
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGFCASSPL 204

Query: 601 AVL 609
           +V+
Sbjct: 205 SVV 207


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 18/54 (33%), Positives = 33/54 (61%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGF 582
           G++   +++  LS+  GRR + ++G+    L+++  A+S N A  +V RF SGF
Sbjct: 87  GVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSGF 140


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 43/80 (53%)
 Frame = +1

Query: 370 MNLSLLDMGTVTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFA 549
           + +SLL M TV  + Y    S  ++W  LS+  GR+  ++ G    G+  ++ A+  +  
Sbjct: 170 LTVSLLTM-TVFLLGY---CSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQ 225

Query: 550 TLLVMRFASGFLFNGPFAVL 609
           T+++ RF +GF  + P  V+
Sbjct: 226 TIMMCRFFAGFFASAPLTVV 245


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLV 561
           G++  AMVW   +DT+GRR      F  +G+  + A  S NFA++ V
Sbjct: 130 GLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICV 176


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGFLFNGPF 600
           G  S  +VW  + +  GRR+ M+   F   +  +  A + +  T+++ RF  GF  + P 
Sbjct: 122 GFASGPVVWAPMCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSPI 181

Query: 601 AVL 609
             +
Sbjct: 182 TTV 184


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGF 582
           G     + W  +S+  GR+  +  G F   + ++  A + +  T+++ RF  G+
Sbjct: 186 GYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGY 239


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -2

Query: 460 PTGSPTPSRTISFLR-----KSWPSQFPYPRETSS 371
           PT SP  S ++SF+        WPSQ+ +P++T S
Sbjct: 232 PTTSPINSTSLSFVDAKKPGSKWPSQYDFPKKTKS 266


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 454 LSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASG 579
           LS+ +GRR + +       ++++  A++ N A LL++RF  G
Sbjct: 160 LSEMIGRRIVYLVTLMIYIVLQIPCALAPNIACLLIVRFFCG 201


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 466 LGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGFLFNGP 597
           +GR++I V        +++  A+  +   LL MRF +GF F  P
Sbjct: 148 VGRQKIYVLSLLVFVCLQIPTALGSSLGVLLPMRFLAGF-FGSP 190


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 GTVTAMTYGGMISSAMVWGFLSDTLGRR 477
           G V A T  G I   +++GFL D  GR+
Sbjct: 86  GVVNAATNIGNIMGQLLFGFLGDFFGRK 113


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 433 SAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGF 582
           S M+   LS+  GRR ++  G     +  +   ++   A + + RF +GF
Sbjct: 98  SPMISAPLSEVFGRRMLLQVGNVIFIVFNMACGLARTKAQMYIFRFLAGF 147


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 421 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASG 579
           G+    +  G LSD LGR+ + +          ++ A++ N+A L++     G
Sbjct: 129 GVALGPLFLGPLSDLLGRKLVYIGSLIIYVCFCISCALARNYAQLVISMLIMG 181


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +1

Query: 451 FLSDTLGRRQIMVWGFFCSGLVEL-------TAAMSXNFATLLVMRFASGF 582
           FL + LGR+ I + G F +GL+         T +    FA  ++ +F S F
Sbjct: 401 FLVEKLGRKWIQLQGLFITGLMFAILAGSWDTISTGGRFACFVIAQFFSNF 451


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 466 LGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASGFLFNGP 597
           +GR++I V        +++  A+  +   LL MRF +G +F  P
Sbjct: 148 IGRQKIYVLSLIVFICLQIPTALGSSLGVLLPMRFLAG-VFGSP 190


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 439 MVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSXNFATLLVMRFASG 579
           M  G LSD  GR+ +     F   +  ++ A+  N   +++  F  G
Sbjct: 135 MFLGPLSDIGGRKPVYFCSIFVYTVFNISCALPRNIVQMIISHFIIG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,646
Number of Sequences: 5004
Number of extensions: 30742
Number of successful extensions: 114
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)