Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22a15
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 32 0.059
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 29 0.42
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 29 0.73
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 26 3.9
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 5.2
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 25 6.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 9.0
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 9.0
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 25 9.0
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 9.0
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 32.3 bits (70), Expect = 0.059
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 163 NENFGLGVYFTEMGNSKSKKAQKEPDRFFERERWKEQQRGEKRKKHAN 306
+ F LG FT + +KA+++ DR E ++ + EKRKKH++
Sbjct: 126 SRRFVLGGTFTSEFSEWMQKAEEDEDRVCEDASSSDEAKREKRKKHSS 173
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 29.5 bits (63), Expect = 0.42
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 188 ILLKWGILSQRKLKRNQID-FSSEKGGRNNSAER 286
ILL G + R L NQ+D F SE GGRN + R
Sbjct: 437 ILLASGSVGDRLLSENQMDLFVSEDGGRNWTLSR 470
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 28.7 bits (61), Expect = 0.73
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 184 VYFTEMGNSKSKKAQKEPDRFFERERWKEQQRGEKRKKHANWANRRVA 327
V E G SKKA K+ E+ER KEQ+R E+ + A +R A
Sbjct: 23 VILGEDGKPLSKKALKK----LEKEREKEQKRKEREAREAEEKKKREA 66
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 206 ILSQRKLKRNQIDFSSEKG 262
+LSQ ++++ ++DFSSE G
Sbjct: 116 VLSQEEMRQRRLDFSSEDG 134
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 157 ISNENFGLGVYFTEMGNSKSKKAQKEPDRFFERERWKEQQRGEKRKKHAN 306
I +EN+G VY + N + + + R+F ++ Q+ E+ KK N
Sbjct: 345 IMDENYGKDVYKHGISNVPDDENEDDLQRYFTALEMQQDQK-EQHKKSKN 393
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 36 VLDVSVLCFHLLIIFGC 86
V+ +S++C L+IFGC
Sbjct: 112 VISISIVCIFDLVIFGC 128
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 584 ASLIECSRSLMGLFLMFCVSLS*FSKN 504
A+ ++C ++ GLF+ FCV + S N
Sbjct: 733 AAAMDCGVAIAGLFIYFCVVYTGGSSN 759
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 455 IMTLMPSFSTTFCYPCSFLKITKVKRKTLK-IIP*ANVSIQSTRLWCAGTSTYF 613
I ++PS FC C +L T V K +I + + I L+C YF
Sbjct: 58 INAMVPSTFALFCMACPYLLYTAVDALLNKDVIQMSALLIFHVSLFCLSVVQYF 111
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 197 KWGILSQRKLKRNQIDFSSEKGGRNNSAERKERSMQ 304
KW S+ K+KR ++ S E+ R A+R+ S Q
Sbjct: 259 KWSTNSESKIKRVALETSQEESDR-EIADRRSASEQ 293
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 211 KSKKAQKEPDRFFE-----RERWKEQQRGEKRKKHANWANRRVAAKE 336
KSK+ K+ D F E +E+ K++Q R+K N R+ KE
Sbjct: 320 KSKEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKKE 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,854
Number of Sequences: 5004
Number of extensions: 42600
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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