Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21p17
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   8.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 481 RLIQFSDVIKNPTRNRSSPT*CQNRYALTFTIYFIKSRVFQMSNXTIMI 627
           +L QF D++ NPT N S+ T   +       +YF   R   M N  I +
Sbjct: 175 KLSQF-DLVANPTANYSASTTLSHAEYSMLLVYFHLQR--HMGNFLIQV 220


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 210 FWNNRTET*VKEPA*QHLYVLFLTGA*VIRVGDVGCFDFFQIDAKGLIS 356
           F  N   T ++     H+   F  G+ +IR GDVG   +   + K  +S
Sbjct: 102 FMKNLELTQIRRDRGLHVSCSFSAGSTIIREGDVGSIVYVMEEGKVEVS 150


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 355 RLNG*GISSDNLKQVNGERSHQY 423
           +LN   I SDN K+VN ++   +
Sbjct: 74  KLNQLEIESDNSKEVNDKKEENF 96


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 244 NQHDSTCMCFFSLELRSYV 300
           N  D  CMCF    L  +V
Sbjct: 364 NVWDGVCMCFIYASLLEFV 382


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 244 NQHDSTCMCFFSLELRSYV 300
           N  D  CMCF    L  +V
Sbjct: 333 NVWDGVCMCFIYASLLEFV 351


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 244 NQHDSTCMCFFSLELRSYV 300
           N  D  CMCF    L  +V
Sbjct: 384 NVWDGVCMCFIYASLLEFV 402


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 244 NQHDSTCMCFFSLELRSYV 300
           N  D  CMCF    L  +V
Sbjct: 333 NVWDGVCMCFIYASLLEFV 351


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -1

Query: 232 VSVRLFQNNLWK*TQGTESEMMCMW 158
           V +   +N  W  T+  +  M C+W
Sbjct: 53  VDIEAVRNGQWPETRQLKCYMYCLW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,527
Number of Sequences: 438
Number of extensions: 4098
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)