Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21p16
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.39 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   1.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   4.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 76  MNPVREGLELEGAPTPETELNPELNMDNISKKSHSQSPN 192
           +N V  G++  G P  ET+   +   DN + KS  + PN
Sbjct: 68  VNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKEFPN 106


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 409 SMYSTVVLNIKDTVRVCVPSFLYI 480
           S++ T+ ++++DT   C  +F YI
Sbjct: 177 SLFVTIAVDVRDTEDKCKDTFAYI 200


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 340 IVKLVICICLVMHESGGVKTGVQSM 414
           ++   IC+C+       +KTG+Q++
Sbjct: 5   VIIFAICVCVGAMTHEELKTGIQTL 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,051
Number of Sequences: 438
Number of extensions: 3747
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)