Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21p05
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.2  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   5.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   5.2  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 33  KLICHFTNTVFFLYSNHAMNYQCYRYNTSFPGTMPMQPVF 152
           K+I   +N   + Y+N+  NY+   YN ++   +P+   F
Sbjct: 313 KIISSLSNN--YNYNNYNNNYKPLHYNINYIEQIPVPVPF 350


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 205 RFTFLLKSWSSYLCL 249
           R T +L  WS++LC+
Sbjct: 391 RHTSVLIGWSAFLCI 405


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 83  CYELSVLQI*HVISGNNANATR 148
           C+E  V Q  H + GN  N  +
Sbjct: 54  CFEACVFQKLHFMDGNTLNVEK 75


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 83  CYELSVLQI*HVISGNNANATR 148
           C+E  V Q  H + GN  N  +
Sbjct: 54  CFEACVFQKLHFMDGNTLNVEK 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,106
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)