Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21p01
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    27   3.8  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.7  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   8.7  

>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 68  LDLGMYYGQSSNNEALESKEIRSDTYESVRL 160
           LD+G  YG+SS  +   S EI  +T   +RL
Sbjct: 233 LDIGSIYGRSSQLKPGHSPEILDETSSVIRL 263


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 686 KCCINTKNVKITITYYLHIL 627
           KCC ++  +K++I  +LH L
Sbjct: 5   KCCSSSNTIKVSIYLFLHTL 24


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 621 HFKNVQIICDSDLNIFSIDATFHDT 695
           +FKN+ IIC +   I+S D+   D+
Sbjct: 826 NFKNISIICIAMTKIYSFDSPLLDS 850


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 399 KSNAIREVAMALNNLPVLLKHLKFLQTVQWVI 494
           K NA  E+ M + N+P     L+    VQW+I
Sbjct: 465 KQNAAHEI-MNITNIPADASDLRIRWRVQWII 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,045
Number of Sequences: 5004
Number of extensions: 66026
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)