Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21o16
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   0.63 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.63 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.63 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 140 FSSCFKTRWCSICCTSDTI 196
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 140 FSSCFKTRWCSICCTSDTI 196
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 140 FSSCFKTRWCSICCTSDTI 196
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -2

Query: 162 LVLKQLEKVQNQATFVC 112
           L+++ +E++ +QAT+ C
Sbjct: 545 LIIENVERMSDQATYTC 561



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 6   ISWIQGLSHRNLPGDDY 56
           +SW        +PGDDY
Sbjct: 137 LSWHTDQGEEFVPGDDY 153


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 39  LPGDDYTDCSFIFLYIL 89
           LPG     C F F+ IL
Sbjct: 370 LPGSSIWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 39  LPGDDYTDCSFIFLYIL 89
           LPG     C F F+ IL
Sbjct: 423 LPGSSIWSCLFFFMLIL 439


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +2

Query: 86  SVYNEHQTKHTKVAWFCTFSSCFKTRWC 169
           S+ N H   H+ V  +   +  + T++C
Sbjct: 30  SMLNSHLKSHSNVYQYRCANCTYATKYC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,323
Number of Sequences: 438
Number of extensions: 1344
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)