Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21o14
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     234   5e-64
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         151   8e-39
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      81   7e-18
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.89 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  234 bits (573), Expect = 5e-64
 Identities = 111/118 (94%), Positives = 114/118 (96%)
 Frame = +2

Query: 251 MVDSQTQHFCLRWNNYQRSITSAFENLRDDEDFVDVTLACDGKSLKAHRVVLSACSPYFR 430
           MVD  TQHFCLRWNNYQ SITSAFENLRDDEDFVDVTLACDG+SLKAHRVVLSACSPYFR
Sbjct: 1   MVD--TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFR 58

Query: 431 ELLKSTPCKHPVIVLQDVAYTDLHALVEFIYHGEVNVHQHSLSSFLKTAEVLRVSGLT 604
           ELLKSTPCKHPVIVLQDVA++DLHALVEFIYHGEVNVHQ SLSSFLKTAEVLRVSGLT
Sbjct: 59  ELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  151 bits (365), Expect = 8e-39
 Identities = 69/122 (56%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
 Frame = +2

Query: 269 QHFCLRWNNYQRSITSAFENLRDDEDFVDVTLACDGKSLKAHRVVLSACSPYFRELLKST 448
           QH+CLRWNNYQ ++TS F  L   E FVDVTLAC+  SLKAH+VVLSACS YF++LL S 
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 449 PCKHPVIVL-QDVAYTDLHALVEFIYHGEVNVHQHSLSSFLKTAEVLRVSGLTH-NDAAQ 622
           PCKHP I++ QDV + DL  ++EF+Y GE++V Q  L S LKTA+ L++ GL    ++  
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128

Query: 623 GP 628
           GP
Sbjct: 129 GP 130


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 81.4 bits (192), Expect = 7e-18
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +2

Query: 251 MVDSQTQHFCLRWNNYQRSITSAFENLRDDEDFVDVTLACD 373
           MVD  TQHFCLRWNNYQ SITSAFENLRDDEDFVDVTLAC+
Sbjct: 1   MVD--TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 400 DSMSFEAFPVAGERDVDEVLVVAKVLE 320
           D++  E + +  E DV+E+L  AKVL+
Sbjct: 567 DNIKKEIYDILPEVDVEEILGEAKVLQ 593


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = +2

Query: 506 LVEFIYHGEVNVHQHSLSSFLK 571
           +++ +Y+G VNV   ++ S+++
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVE 64


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 686 PGGVACGVTELLTTAWSAAG 627
           P  V+ GVT LLT A   +G
Sbjct: 271 PARVSLGVTTLLTMATQTSG 290


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 686 PGGVACGVTELLTTAWSAAG 627
           P  V+ GVT LLT A   +G
Sbjct: 271 PARVSLGVTTLLTMATQTSG 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,690
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)