Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21o08
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 220 IIFAFFRFLGFYPTPSTTPNCILV 149
           ++F   R LG+Y   +  P C++V
Sbjct: 236 VVFVLKRRLGYYLFHTYIPTCLIV 259


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 290 LDDYIKVWQLDNGKLEI 340
           +D+  ++W LD+GK++I
Sbjct: 253 VDECDRLWILDSGKVDI 269


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 290 LDDYIKVWQLDNG 328
           +D+Y ++W LD+G
Sbjct: 134 IDEYERLWVLDSG 146


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 620 FTLSVAYSPDGKYI 661
           F+++V Y PD KY+
Sbjct: 144 FSIAVLYRPDTKYM 157


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 620 FTLSVAYSPDGKYI 661
           F+++V Y PD KY+
Sbjct: 144 FSIAVLYRPDTKYM 157


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 290 LDDYIKVWQLDNG 328
           +D++ ++W LDNG
Sbjct: 130 IDEWDRLWVLDNG 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,827
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)