Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21o03
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    30   0.32 
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   5.2  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   6.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.0  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   9.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.0  

>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 322 EKRGSVRGDVVESRKVEGYGKVYRFTGVVNCPARFLYEEFKNNLTKLPEWNPTILKCEII 501
           ++R S R D+V S K   Y   YR   +VN   +  Y E K +  +   +N  I +  + 
Sbjct: 477 QRRTSGRHDLVHSSKKVSYETKYRIERLVNAALKPYYREAKISKDQFALFNKNICR-SVY 535

Query: 502 KEIGDG 519
             + DG
Sbjct: 536 TALSDG 541


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 113 CNIFLHYLLQHTELHIAFGIDFFLTRTQPPYPVNG 9
           C ++ ++ +  TE  +   I+ FL    P  PVNG
Sbjct: 299 CGVYTNFTVAKTEECVLASIETFLDTGIPTNPVNG 333


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 585 HEVARGYYASSPASRHLVRQV-HAI 514
           H++ R  Y S   SRH++ QV HAI
Sbjct: 220 HQIVRLTYFSEDLSRHVITQVAHAI 244


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 178 ELLALYLNSYFNIASLCNTKG 116
           ELL   LNSY N  S+C   G
Sbjct: 515 ELLKFCLNSYVNFVSVCTLFG 535


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 86  QHTELHIAFGIDFFLTRTQPPYP 18
           + T L ++ G+D F TRT P  P
Sbjct: 821 ESTTLVLSTGLDVFFTRTAPSMP 843


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 406  VNCPARFLYEEFKNNLTKLPEWN 474
            +N P++ LY++F N+     +WN
Sbjct: 1294 MNAPSKSLYQKFVNDYLIFAKWN 1316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,861
Number of Sequences: 5004
Number of extensions: 45592
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)