Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21n01
         (127 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   0.26 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   3.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   3.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   7.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 83  NYKLIDRFVDFLTIVILP-CFFKNVK 9
           +Y+++D  VD+L  +  P CFFKN K
Sbjct: 75  DYRILD--VDWLHNIWRPDCFFKNAK 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +3

Query: 57   HKPVNKFIISIINQSVKV 110
            ++P+N+F  ++++ SVK+
Sbjct: 1536 YRPINEFHWTLVSNSVKM 1553


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +3

Query: 57   HKPVNKFIISIINQSVKV 110
            ++P+N+F  ++++ SVK+
Sbjct: 1532 YRPINEFHWTLVSNSVKM 1549


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 95  VYYRNYKLIDRFVD 54
           V+Y+NY L   F+D
Sbjct: 369 VFYKNYLLNVSFID 382


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 95  VYYRNYKLIDRFVD 54
           V+Y+NY L   F+D
Sbjct: 459 VFYKNYLLNVSFID 472


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 48  QEVHKPVNKFIISIINQSV 104
           QEVH+ +  +    +NQ+V
Sbjct: 181 QEVHEKLRNWFSKNVNQTV 199


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 23 RNMAKLQWSRSPQ 61
          R M+K+QW R P+
Sbjct: 30 RTMSKIQW-RKPK 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,899
Number of Sequences: 438
Number of extensions: 339
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)