Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m19
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   5.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   7.0  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 261 NRNSFPRNFHAYYALLV-SYTALK 193
           ++N F RN+H +Y LL  + TALK
Sbjct: 260 HQNEFERNYHVFYQLLSGADTALK 283


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 555 EDSDNLWWDAF 587
           ED+  LWWDAF
Sbjct: 346 EDTSKLWWDAF 356


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 513 YRVYELNKRLQQRTEDSDNLWWDAFATEFF 602
           Y  ++L KRL  R +  D L +   + EFF
Sbjct: 452 YSAHDLKKRLMIRFDGEDGLDYGGLSREFF 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,058
Number of Sequences: 5004
Number of extensions: 25017
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)