Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m19
         (643 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034019-1|AAH34019.1|  373|Homo sapiens LIM domain binding 2 pr...   114   3e-25
AF068651-1|AAC77817.1|  373|Homo sapiens LIM-domain binding fact...   114   3e-25
AF064493-1|AAC28343.1|  331|Homo sapiens LIM homeobox protein co...   114   3e-25
AF064492-1|AAC28342.1|  373|Homo sapiens LIM homeobox protein co...   114   3e-25
AF047337-1|AAC83552.1|  373|Homo sapiens LIM homeobox protein co...   114   3e-25
AF052389-1|AAC13274.1|  347|Homo sapiens LIM domain binding prot...   100   9e-21
BT007054-1|AAP35703.1|  375|Homo sapiens LIM domain binding 1 pr...    99   2e-20
BC009246-1|AAH09246.1|  375|Homo sapiens LIM domain binding 1 pr...    99   2e-20
BC000482-1|AAH00482.1|  375|Homo sapiens LIM domain binding 1 pr...    99   2e-20
AL500527-4|CAH72217.1|  375|Homo sapiens LIM domain binding 1 pr...    99   2e-20
AJ243098-1|CAB45409.1|  402|Homo sapiens Nuclear LIM interactor ...    99   2e-20
AF068652-1|AAC77818.1|  375|Homo sapiens LIM-domain binding fact...    99   2e-20
AF064491-1|AAC28341.1|  375|Homo sapiens LIM homeobox protein co...    99   2e-20
AB250384-1|BAE95402.1|  316|Homo sapiens LIM-domain-binding prot...    99   2e-20
AB016485-1|BAA31991.1|  375|Homo sapiens LIM homeobox protein co...    99   2e-20
AC106894-1|AAY40912.1|   44|Homo sapiens unknown protein.              52   1e-06

>BC034019-1|AAH34019.1|  373|Homo sapiens LIM domain binding 2
           protein.
          Length = 373

 Score =  114 bits (274), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 52/55 (94%)
 Frame = +3

Query: 477 FRRHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           +RRHTPY  QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLE
Sbjct: 18  YRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLE 72


>AF068651-1|AAC77817.1|  373|Homo sapiens LIM-domain binding factor
           CLIM1 protein.
          Length = 373

 Score =  114 bits (274), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 52/55 (94%)
 Frame = +3

Query: 477 FRRHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           +RRHTPY  QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLE
Sbjct: 18  YRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLE 72


>AF064493-1|AAC28343.1|  331|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 331

 Score =  114 bits (274), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 52/55 (94%)
 Frame = +3

Query: 477 FRRHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           +RRHTPY  QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLE
Sbjct: 18  YRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLE 72


>AF064492-1|AAC28342.1|  373|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 373

 Score =  114 bits (274), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 52/55 (94%)
 Frame = +3

Query: 477 FRRHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           +RRHTPY  QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLE
Sbjct: 18  YRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLE 72


>AF047337-1|AAC83552.1|  373|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 373

 Score =  114 bits (274), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 52/55 (94%)
 Frame = +3

Query: 477 FRRHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           +RRHTPY  QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLE
Sbjct: 18  YRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLE 72


>AF052389-1|AAC13274.1|  347|Homo sapiens LIM domain binding protein
           protein.
          Length = 347

 Score = 99.5 bits (237), Expect = 9e-21
 Identities = 41/46 (89%), Positives = 45/46 (97%)
 Frame = +3

Query: 504 QPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLE
Sbjct: 3   QPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLE 48


>BT007054-1|AAP35703.1|  375|Homo sapiens LIM domain binding 1
           protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>BC009246-1|AAH09246.1|  375|Homo sapiens LIM domain binding 1
           protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>BC000482-1|AAH00482.1|  375|Homo sapiens LIM domain binding 1
           protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>AL500527-4|CAH72217.1|  375|Homo sapiens LIM domain binding 1
           protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>AJ243098-1|CAB45409.1|  402|Homo sapiens Nuclear LIM interactor
           protein.
          Length = 402

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 50  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 102


>AF068652-1|AAC77818.1|  375|Homo sapiens LIM-domain binding factor
           CLIM2 protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>AF064491-1|AAC28341.1|  375|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>AB250384-1|BAE95402.1|  316|Homo sapiens LIM-domain-binding protein
           1b protein.
          Length = 316

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>AB016485-1|BAA31991.1|  375|Homo sapiens LIM homeobox protein
           cofactor (CLIM-2) protein.
          Length = 375

 Score = 98.7 bits (235), Expect = 2e-20
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +3

Query: 483 RHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLE 641
           RHTPY  Q DYR++ELNKRLQ  TE+ DNLWWDAF TEFFEDDA LT+TFCLE
Sbjct: 23  RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLE 75


>AC106894-1|AAY40912.1|   44|Homo sapiens unknown protein.
          Length = 44

 Score = 52.4 bits (120), Expect = 1e-06
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +3

Query: 477 FRRHTPYFGQPDYRVYELNKRLQQRTE 557
           +RRHTPY  QP+YR+YE+NKRLQ RTE
Sbjct: 18  YRRHTPYMVQPEYRIYEMNKRLQSRTE 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,818,080
Number of Sequences: 237096
Number of extensions: 861538
Number of successful extensions: 1113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)