Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m11
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   1.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   3.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    23   5.3  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    23   7.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    23   7.0  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    23   7.0  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    22   9.3  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   EIFNLVLNNLSTSKQLTVGSLDIVQSVQMEQYFQI 105
           E+  L  + L+   Q+TVGSLD+  S  ++Q  ++
Sbjct: 313 EVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEV 347


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   IFNLVLNNLSTSKQLTVGSLDI 69
           +FNL+  +LS  ++  VG LD+
Sbjct: 355 LFNLITESLSQEQKKVVGFLDV 376


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 28   LSTSKQLTVGSLDIVQSVQMEQYFQITYY 114
            L   K L+VG LDI    +   YF +  Y
Sbjct: 1043 LKICKSLSVGLLDISNWDEWNNYFDLNTY 1071


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  LVLNNLSTSKQLTVGSLDIVQSVQMEQYFQIT 108
           L+L+ L++ KQL   S+DI    + E +  +T
Sbjct: 150 LLLHKLNSLKQLYTMSMDIHSRYRTEAHSDVT 181


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 10  NLVLNNLSTSKQLTVGSLDIVQS 78
           +++LN   TSK L+  SL+ V S
Sbjct: 647 DIILNRSPTSKHLSTSSLNRVNS 669


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 3   NLQFSFKQSFHIKTTHSRFSRHRTE 77
           N   +FK    I+T + + S++RTE
Sbjct: 133 NTSMTFKDILEIRTQNMKASQNRTE 157


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 79  VQMEQYFQITYYYLTIEHPVC 141
           VQ+  ++ I Y++ T   P+C
Sbjct: 91  VQLALFYVINYFFSTGRQPLC 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,251
Number of Sequences: 5004
Number of extensions: 9811
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)