Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m11
         (185 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   1.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   4.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   5.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    19   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   5.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    18   9.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    18   9.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    18   9.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    18   9.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    18   9.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    18   9.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    18   9.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = +3

Query: 18  FKQSFHIKTTHSRFSRHRTECSNGAVFSNNVLLLNYRTPC 137
           +  SFH    +S+   H+ +C  G   + +    +  T C
Sbjct: 790 YAASFHTDIGNSQSLAHQDQCCPGFTMTKSGKTRHQNTGC 829


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 106 TYYYLTIEHPVCK 144
           T Y+ T+E  +CK
Sbjct: 376 TIYWFTVEFGLCK 388


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 51  SRFSRHRTECSNGAVFSNNVLLLNYRTPC 137
           SR  +  +  SN  + +NN    NY   C
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNC 104


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 39  KTTHSRFSRHR 71
           +T+H R+SR R
Sbjct: 266 RTSHKRYSRSR 276


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/19 (26%), Positives = 11/19 (57%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHSVRC 65
           +  N + E  +P E +++C
Sbjct: 224 VEGNGVHEENSPLEDNIKC 242


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 111 IRYLKILLHLNTLY 70
           + +  IL H+NT+Y
Sbjct: 261 LTFENILSHINTVY 274


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 111 IRYLKILLHLNTLY 70
           + +  IL H+NT+Y
Sbjct: 261 LTFENILSHINTVY 274


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHS 74
           LSNNT+  N   + ++
Sbjct: 84  LSNNTIHNNNYKYNYN 99


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHS 74
           LSNNT+  N   + ++
Sbjct: 84  LSNNTIHNNNYKYNYN 99


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHS 74
           LSNNT+  N   + ++
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHS 74
           LSNNT+  N   + ++
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHS 74
           LSNNT+  N   + ++
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 121 LSNNTLFENTAPFEHS 74
           LSNNT+  N   + ++
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 171 IHFNRYASKLTNRV 130
           IH N Y   L+NR+
Sbjct: 373 IHKNEYMLALSNRM 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,702
Number of Sequences: 438
Number of extensions: 759
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)